Tabs(ALL, DNA, BLAST, GO, Taxonomy, DO, Reference) are clickable.
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Reference Related Resource Count : 23,108
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Associated Resources List
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3206 items
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Organism |
strain |
General microbes
|
Algae |
5 |
|
Archaea |
212 |
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Bacteria |
2729 |
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Fungi |
141 |
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Yeasts |
119 |
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|
Organism |
DNA |
Associated Resource is not found. |
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General microbes:
|
JCM9641
|
Available
|
Riken BRC
|
Category: Algae
History : |
<-- CBS 605.66 <-- W. B. Cooke SEC L-1690. |
xref ID : |
ATCC 16528; CBS 605.66 |
Scientific Name : |
Prototheca stagnora (Cooke) Pore |
Old Scientific Name : |
Prototheca stagnora |
Source : |
Bottom sludge, Ohio, USA |
Phylogeny : |
https://identifiers.org/insdc:AB097091 |
Medium Temp, etc : |
POTATO--DEXTROSE AGAR, YM AGAR, YM BROTH, 25C |
Taxonomy : |
Prototheca stagnorum
|
Reference : |
Yoneda K, Ogata M, Nishiyama K, Fukuda K, Yasuda S, Igoshi K, Kinoshita H (2019) Crystal Structure of Cell Surface Glyceraldehyde-3-Phosphate Dehydrogenase fromLactobacillus plantarum:Insight into the Mercury Binding Mechanism. (in Japanese) Milk Science 69 3-11
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General microbes:
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JCM15793
|
Available
|
Riken BRC
|
Category: Algae
History : |
<-- K. Makimura strain asahi57. |
xref ID : |
CBS 11262; DSM 22084 |
Scientific Name : |
Prototheca cutis Satoh & Makimura |
Old Scientific Name : |
Prototheca cutis |
Source : |
Inflamed skin of a male patient with protothecosis, Asahi General Hospital, Chiba, Japan |
Phylogeny : |
https://identifiers.org/insdc:AB470468; https://identifiers.org/insdc:AB470469 |
Medium Temp, etc : |
POTATO--DEXTROSE AGAR, YM AGAR, YM BROTH, 25C |
Biosafety Level : |
BSL 2 |
Taxonomy : |
Prototheca cutis
|
Reference : |
Wu Q, Lan Y, Xu H, Cao Y (2019) Characterization of the complete mitochondrial genome and phylogenetic analysis of Prototheca stagnorum (chlorellales: Chlorellaceae). Mitochondrial DNA Part B 4 4000-4001
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General microbes:
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JCM31123
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Available
|
Riken BRC
|
Category: Algae
History : |
<-- J. Sugiyama<-- TechnoSuruga Lab. Co. Ltd. Japan<-- T6713-13-10. |
xref ID : |
CBS 140669 |
Scientific Name : |
Prototheca tumulicola Nagatsuka et al. |
Old Scientific Name : |
Prototheca tumulicola |
Source : |
Soil on the floor below the painting of the group of women on the east wall inside the Takamatsuzuka Tumulus, Asuka, Nara Pref., Japan |
Phylogeny : |
https://identifiers.org/insdc:LC090551; https://identifiers.org/insdc:LC090552 |
Medium Temp, etc : |
YM AGAR, 25C |
Taxonomy : |
Prototheca tumulicola
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Reference : |
Jagielski T, Bakuła Z, Gawor J, Maciszewski K, Kusber WH, Dyląg M, Nowakowska J, Gromadka R, Karnkowska A (2019) The genus Prototheca (Trebouxiophyceae, Chlorophyta) revisited: Implications from molecular taxonomic studies. Algal Research 43 101639
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General microbes:
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JCM32111
|
Available
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Riken BRC
|
Category: Algae
General microbes:
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JCM32112
|
Available
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Riken BRC
|
Category: Algae
General microbes:
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JCM7785
|
Available
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Riken BRC
|
Category: Archaea
History : |
<-- T. Takashina TR-1. |
xref ID : |
ATCC 49778; CGMCC 1.3717; CGMCC 1.6162; DSM 6131; NBRC 101032; NCIMB 13157; VKM B-2009 |
Scientific Name : |
Haloarcula japonica Takashina et al. 1991 |
Old Scientific Name : |
Haloarcula japonica |
Source : |
Saltern soil at Noto Peninsula, Japan |
Phylogeny : |
https://identifiers.org/insdc:AB477146; https://identifiers.org/insdc:D28872; https://identifiers.org/insdc:EF645684; https://identifiers.org/insdc:EF645685; https://identifiers.org/insdc:EF645686 |
Medium Temp, etc : |
CM+YE MEDIUM, HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C |
Taxonomy : |
Haloarcula japonica
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Reference : |
Sueda R, Yoshida K, Onodera M, Fukui T, Yatsunami R, Nakamura S. (2021) Characterization of a GlgC homolog from extremely halophilic archaeon Haloarcula japonica. Biosci Biotechnol Biochem 85(6) 1441-1447
Enomoto S, Shimane Y, Ihara K, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R, Takai K, Minegishi H. (2020) <i>Haloarcula mannanilytica</i> sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt. Int J Syst Evol Microbiol 70(12) 6331-6337
Nagaoka S, Sugiyama N, Yatsunami R, Nakamura S. (2021) Characterization of 3-isopropylmalate dehydrogenase from extremely halophilic archaeon Haloarcula japonica. Biosci Biotechnol Biochem 85(9) 1986-1994
Sato Y, Kimura H. (2019) Temperature-dependent expression of different guanine-plus-cytosine content 16S rRNA genes in Haloarcula strains of the class Halobacteria. Antonie Van Leeuwenhoek 112(2) 187-201
Yang Y, Cui HL, Zhou PJ, Liu SJ. (2007) Haloarcula amylolytica sp. nov., an extremely halophilic archaeon isolated from Aibi salt lake in Xin-Jiang, China. Int J Syst Evol Microbiol 57(Pt 1) 103-106
Cui HL, Zhou PJ, Oren A, Liu SJ. (2009) Intraspecific polymorphism of 16S rRNA genes in two halophilic archaeal genera, Haloarcula and Halomicrobium. Extremophiles 13(1) 31-7
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General microbes:
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JCM8422
|
Available
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Riken BRC
|
Category: Archaea
History : |
<-- DSM 3638 <-- K. O. Stetter and G. Fiala Vc 1. |
xref ID : |
ATCC 43587; CGMCC 1.2516; DSM 3638 |
Scientific Name : |
Pyrococcus furiosus Fiala and Stetter 1986 |
Old Scientific Name : |
Pyrococcus furiosus |
Source : |
Hot sediment at the beach of Porto di Levante, Vulcano Island, Italy |
Phylogeny : |
https://identifiers.org/insdc:AB603518 |
Medium Temp, etc : |
PYROCOCCUS MEDIUM, 95C |
Taxonomy : |
Pyrococcus furiosus
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Reference : |
Hamana, K., Hosoya, R., Niitsu, M., Hayashi, H., and Itoh, T. (2008) Temperature and salt dependent long linear and branched polyamine syntheses in the thermophiles belonging to the domain Archaea. J Jpn Soc Extremophiles 7 121-27
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General microbes:
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JCM8558
|
Available
|
Riken BRC
|
Category: Archaea
History : |
<-- DSM 2476 <-- W. Zillig Vu13. |
xref ID : |
ATCC 35543; DSM 2476 |
Scientific Name : |
Thermococcus celer Zillig 1983 |
Old Scientific Name : |
Thermococcus celer |
Source : |
Solfataric marine water hole on a beach of Vulcano, Italy |
Phylogeny : |
https://identifiers.org/insdc:AB603519; https://identifiers.org/insdc:AY099174; https://identifiers.org/insdc:M12711; https://identifiers.org/insdc:M21529; https://identifiers.org/insdc:M67497 |
Medium Temp, etc : |
THERMOCOCCUS CELER MEDIUM, THERMOCOCCUS MEDIUM, 85C |
Taxonomy : |
Thermococcus celer
|
Reference : |
Kuwabara T, Minaba M, Ogi N, Kamekura M. (2007) Thermococcus celericrescens sp. nov., a fast-growing and cell-fusing hyperthermophilic archaeon from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 57(Pt 3) 437-443
Pikuta EV, Marsic D, Itoh T, Bej AK, Tang J, Whitman WB, Ng JD, Garriott OK, Hoover RB. (2007) Thermococcus thioreducens sp. nov., a novel hyperthermophilic, obligately sulfur-reducing archaeon from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 57(Pt 7) 1612-1618
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General microbes:
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JCM8559
|
Available
|
Riken BRC
|
Category: Archaea
General microbes:
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JCM8863
|
Available
|
Riken BRC
|
Category: Archaea
History : |
<-- M. Kamekura <-- ATCC 33959 <-- G. Juez Ma-2.38. |
xref ID : |
ATCC 33959; CCM 3603; DSM 4427; IAM 13646; NBRC 102184; NCIMB 2188; VKM B-1756 |
Scientific Name : |
Haloferax gibbonsii Juez et al. 1986 |
Old Scientific Name : |
Haloferax gibbonsii |
Source : |
Solar saltern near Alicante, Spain |
Phylogeny : |
https://identifiers.org/insdc:AB477164; https://identifiers.org/insdc:D13378 |
Medium Temp, etc : |
HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C |
Taxonomy : |
Haloferax gibbonsii
|
Reference : |
Zhang G, Dong X, Sun Y, Antunes A, Hikmawan T, Haroon MF, Wang J, Stingl U. (2020) <i>Haloferax profundi</i> sp. nov. and <i>Haloferax marisrubri</i> sp. nov., Isolated from the Discovery Deep Brine-Seawater Interface in the Red Sea. Microorganisms 8(10)
Enache M, Itoh T, Kamekura M, Teodosiu G, Dumitru L. (2007) Haloferax prahovense sp. nov., an extremely halophilic archaeon isolated from a Romanian salt lake. Int J Syst Evol Microbiol 57(Pt 2) 393-397
Allen MA, Goh F, Leuko S, Echigo A, Mizuki T, Usami R, Kamekura M, Neilan BA, Burns BP. (2008) Haloferax elongans sp. nov. and Haloferax mucosum sp. nov., isolated from microbial mats from Hamelin Pool, Shark Bay, Australia. Int J Syst Evol Microbiol 58(Pt 4) 798-802
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General microbes:
|
JCM8864
|
Available
|
Riken BRC
|
Category: Archaea
History : |
<-- M. Kamekura <-- ATCC 35960 <-- L. I. Hochstein S1. |
xref ID : |
ATCC 35960; CGMCC 1.2198; DSM 4425; NCIMB 13115; VKM B-1754 |
Scientific Name : |
Haloferax denitrificans (Tomlinson et al. 1986) Tindall et al. 1989 |
Old Scientific Name : |
Halobacterium denitrificans |
Source : |
Saltern in the southern portion of the San Francisco Bay |
Phylogeny : |
https://identifiers.org/insdc:AB477163; https://identifiers.org/insdc:D14128 |
Medium Temp, etc : |
HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C |
Taxonomy : |
Haloferax denitrificans
|
Reference : |
Zhang G, Dong X, Sun Y, Antunes A, Hikmawan T, Haroon MF, Wang J, Stingl U. (2020) <i>Haloferax profundi</i> sp. nov. and <i>Haloferax marisrubri</i> sp. nov., Isolated from the Discovery Deep Brine-Seawater Interface in the Red Sea. Microorganisms 8(10)
Enache M, Itoh T, Kamekura M, Teodosiu G, Dumitru L. (2007) Haloferax prahovense sp. nov., an extremely halophilic archaeon isolated from a Romanian salt lake. Int J Syst Evol Microbiol 57(Pt 2) 393-397
Allen MA, Goh F, Leuko S, Echigo A, Mizuki T, Usami R, Kamekura M, Neilan BA, Burns BP. (2008) Haloferax elongans sp. nov. and Haloferax mucosum sp. nov., isolated from microbial mats from Hamelin Pool, Shark Bay, Australia. Int J Syst Evol Microbiol 58(Pt 4) 798-802
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General microbes:
|
JCM8866
|
Available
|
Riken BRC
|
Category: Archaea
History : |
<-- IFO 14739 <-- ATCC 33500 <-- F. Rodoriguez-Valera R-4. |
xref ID : |
ATCC 33500; BCRC AR10047; CCM 3361; CGMCC 1.2630; CGMCC 1.3716; DSM 1411; IAM 13647; IFO 14739; NBRC 14739; NCIMB 2177; VKM B-1748 |
Scientific Name : |
Haloferax mediterranei (Rodriguez-Valera et al. 1983) Torreblanca et al. 1987 |
Old Scientific Name : |
Halobacterium mediterranei |
Source : |
Salt pond near Alicante, Spain |
Phylogeny : |
https://identifiers.org/insdc:AB477167; https://identifiers.org/insdc:D11107; https://identifiers.org/insdc:S39859; https://identifiers.org/insdc:S76923; https://identifiers.org/insdc:X14441 |
Medium Temp, etc : |
HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C |
Taxonomy : |
Haloferax mediterranei
|
Reference : |
Zhang G, Dong X, Sun Y, Antunes A, Hikmawan T, Haroon MF, Wang J, Stingl U. (2020) <i>Haloferax profundi</i> sp. nov. and <i>Haloferax marisrubri</i> sp. nov., Isolated from the Discovery Deep Brine-Seawater Interface in the Red Sea. Microorganisms 8(10)
Enache M, Itoh T, Kamekura M, Teodosiu G, Dumitru L. (2007) Haloferax prahovense sp. nov., an extremely halophilic archaeon isolated from a Romanian salt lake. Int J Syst Evol Microbiol 57(Pt 2) 393-397
Allen MA, Goh F, Leuko S, Echigo A, Mizuki T, Usami R, Kamekura M, Neilan BA, Burns BP. (2008) Haloferax elongans sp. nov. and Haloferax mucosum sp. nov., isolated from microbial mats from Hamelin Pool, Shark Bay, Australia. Int J Syst Evol Microbiol 58(Pt 4) 798-802
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General microbes:
|
JCM8876
|
Available
|
Riken BRC
|
Category: Archaea
General microbes:
|
JCM8877
|
Available
|
Riken BRC
|
Category: Archaea
General microbes:
|
JCM8878
|
Available
|
Riken BRC
|
Category: Archaea
History : |
<-- ATCC 49257 <-- A. Ventosa P-423. |
xref ID : |
ATCC 49257; CCM 4147; CGMCC 1.6994; DSM 5350; NCIMB 12837; VKM B-1770 |
Scientific Name : |
Halococcus saccharolyticus Montero et al. 1990 |
Old Scientific Name : |
Halococcus saccharolyticus |
Source : |
Ponds of saltern in San Fernando, Cáidz, Spain |
Phylogeny : |
https://identifiers.org/insdc:AB004876; https://identifiers.org/insdc:AB477159 |
Medium Temp, etc : |
\, HALOALKALIPHILE MEDIUM, 37C |
Taxonomy : |
Halococcus saccharolyticus
|
Reference : |
Namwong S, Tanasupawat S, Visessanguan W, Kudo T, Itoh T. (2007) Halococcus thailandensis sp. nov., from fish sauce in Thailand. Int J Syst Evol Microbiol 57(Pt 10) 2199-2203
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General microbes:
|
JCM8879
|
Available
|
Riken BRC
|
Category: Archaea
History : |
<-- NCIMB 2012 <-- H. Larsen DS2. |
xref ID : |
ATCC 29605; CCM 2852; CGMCC 1.2150; CGMCC 1.3715; DSM 3757; IAM 13648; IFO 14742; NBRC 14742; NCIMB 2012; VKM B-1768 |
Scientific Name : |
Haloferax volcanii (Mullakhanbhai and Larsen 1975) Torreblanca et al. 1986 |
Old Scientific Name : |
Halobacterium volcanii |
Source : |
Sediment from the Dead Sea |
Phylogeny : |
https://identifiers.org/insdc:AB477170; https://identifiers.org/insdc:K00421; https://identifiers.org/insdc:S76922; https://identifiers.org/insdc:X02127; https://identifiers.org/insdc:X02128; https://identifiers.org/insdc:X02129 |
Medium Temp, etc : |
HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C |
Taxonomy : |
Haloferax volcanii
|
Reference : |
Zhang G, Dong X, Sun Y, Antunes A, Hikmawan T, Haroon MF, Wang J, Stingl U. (2020) <i>Haloferax profundi</i> sp. nov. and <i>Haloferax marisrubri</i> sp. nov., Isolated from the Discovery Deep Brine-Seawater Interface in the Red Sea. Microorganisms 8(10)
Enache M, Itoh T, Kamekura M, Teodosiu G, Dumitru L. (2007) Haloferax prahovense sp. nov., an extremely halophilic archaeon isolated from a Romanian salt lake. Int J Syst Evol Microbiol 57(Pt 2) 393-397
Allen MA, Goh F, Leuko S, Echigo A, Mizuki T, Usami R, Kamekura M, Neilan BA, Burns BP. (2008) Haloferax elongans sp. nov. and Haloferax mucosum sp. nov., isolated from microbial mats from Hamelin Pool, Shark Bay, Australia. Int J Syst Evol Microbiol 58(Pt 4) 798-802
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General microbes:
|
JCM8880
|
Available
|
Riken BRC
|
Category: Archaea
History : |
<-- IFO 14740 <-- ATCC 33755 <-- A. Oren RD-26. |
xref ID : |
ATCC 33755; CGMCC 1.2928; CIP 105330; DSM 3755; IFO 14740; NBRC 14740; NCIMB 2197; VKM B-1771 |
Scientific Name : |
Halorubrum sodomense (Oren 1983) McGenity and Grant 1996 |
Old Scientific Name : |
Halobacterium sodomense |
Source : |
Surface water from the Dead Sea |
Phylogeny : |
https://identifiers.org/insdc:AB477185; https://identifiers.org/insdc:D13379; https://identifiers.org/insdc:X82169 |
Medium Temp, etc : |
HALOBACTERIA MEDIUM, \, HALONEUTROPHILE MEDIUM, 37C |
Taxonomy : |
Halorubrum sodomense
|
Reference : |
Mancinelli RL, Landheim R, Sánchez-Porro C, Dornmayr-Pfaffenhuemer M, Gruber C, Legat A, Ventosa A, Radax C, Ihara K, White MR, Stan-Lotter H. (2009) Halorubrum chaoviator sp. nov., a haloarchaeon isolated from sea salt in Baja California, Mexico, Western Australia and Naxos, Greece. Int J Syst Evol Microbiol 59(Pt 8) 1908-13
Pesenti PT, Sikaroodi M, Gillevet PM, Sánchez-Porro C, Ventosa A, Litchfield CD. (2008) Halorubrum californiense sp. nov., an extreme archaeal halophile isolated from a crystallizer pond at a solar salt plant in California, USA. Int J Syst Evol Microbiol 58(Pt 12) 2710-5
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General microbes:
|
JCM8911
|
Available
|
Riken BRC
|
Category: Archaea
History : |
<-- IAM 13179 <-- F. Rodriguez-Valera Y27. |
xref ID : |
ATCC 33960; CCM 3601; DSM 4426; IAM 13179; NBRC 102182; NCIMB 2187; VKM B-1755 |
Scientific Name : |
Haloarcula hispanica Juez et al. 1986 |
Old Scientific Name : |
Haloarcula hispanica |
Source : |
Solar saltern near Alicante, Spain |
Phylogeny : |
https://identifiers.org/insdc:AB477145; https://identifiers.org/insdc:EF645682; https://identifiers.org/insdc:EF645683 |
Medium Temp, etc : |
HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C |
Taxonomy : |
Haloarcula hispanica
|
Reference : |
Enomoto S, Shimane Y, Ihara K, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R, Takai K, Minegishi H. (2020) <i>Haloarcula mannanilytica</i> sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt. Int J Syst Evol Microbiol 70(12) 6331-6337
Sato Y, Kimura H. (2019) Temperature-dependent expression of different guanine-plus-cytosine content 16S rRNA genes in Haloarcula strains of the class Halobacteria. Antonie Van Leeuwenhoek 112(2) 187-201
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General microbes:
|
JCM8912
|
Available
|
Riken BRC
|
Category: Archaea
General microbes:
|
JCM8929
|
Available
|
Riken BRC
|
Category: Archaea
History : |
<-- DSM 639 <-- T. D. Brock 98-3. |
xref ID : |
ATCC 33909; DSM 639; IFO 15157; NBRC 15157; NCIMB 11770 |
Scientific Name : |
Sulfolobus acidocaldarius Brock et al. 1972 |
Old Scientific Name : |
Sulfolobus acidocaldarius |
Source : |
Locomotive Spring in Yellowstone National Park, WY, USA |
Phylogeny : |
https://identifiers.org/insdc:D14053; https://identifiers.org/insdc:D14876; https://identifiers.org/insdc:U05019; https://identifiers.org/insdc:U32320; https://identifiers.org/insdc:X52382 |
Medium Temp, etc : |
SULFOLOBUS MEDIUM, SULFOLOBUS MEDIUM, 70C |
Taxonomy : |
Sulfolobus acidocaldarius
|
Reference : |
Kanno N, Kato S, Ohkuma M, Matsui M, Iwasaki W, Shigeto S. (2021) Machine learning-assisted single-cell Raman fingerprinting for <i>in situ</i> and nondestructive classification of prokaryotes. iScience 24(9) 102975
Horai S, Yamauchi N, Naraoka H. (2019) Simultaneous total analysis of core and polar membrane lipids in archaea by high-performance liquid chromatography/high-resolution mass spectrometry coupled with heated electrospray ionization. Rapid Commun Mass Spectrom 33(20) 1571-1577
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Associated Resource is not found.
|