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Reference Related Resource Count : 23,881

Associated Resources List

27 items
Strain   20 items Go to list of Strain
DNA   7 items Go to list of DNA
Organism strain
Tomato EMS mutagenesis lines 3 Go to list
gamma irradiation-induced mutant lines 6 Go to list
Wild type cultivars 10 Go to list
EMS and gamma irradiation-induced mutant lines 1 Go to list
Organism DNA
Tomato LEFL2 3 Go to list
LEFL1 2 Go to list
LEFL3 2 Go to list
Strain List 20 items 1 - 20 / 20
Tomato: TOMJPE5044-1  Available University of Tsukuba
Category: EMS mutagenesis lines
Tomato: TOMJPE6018-1  Available University of Tsukuba
Category: EMS mutagenesis lines
Tomato: TOMJPE0206-1 University of Tsukuba
Category: EMS mutagenesis lines
Tomato: TOMJPG1269-1 University of Tsukuba
Category: gamma irradiation-induced mutant lines
Tomato: TOMJPG1679-1  Available University of Tsukuba
Category: gamma irradiation-induced mutant lines
Tomato: TOMJPG2637-1  Available University of Tsukuba
Category: gamma irradiation-induced mutant lines
Tomato: TOMJPG2893-1  Available University of Tsukuba
Category: gamma irradiation-induced mutant lines
Tomato: TOMJPG5663-1  Available University of Tsukuba
Category: gamma irradiation-induced mutant lines
Tomato: TOMJPG4497-1  Available University of Tsukuba
Category: gamma irradiation-induced mutant lines
Tomato: TOMJPF00003  Available University of Tsukuba
Category: Wild type cultivars
Tomato: TOMJPF00004  Available University of Tsukuba
Category: Wild type cultivars
Tomato: TOMJPF00005  Available University of Tsukuba
Category: Wild type cultivars
Tomato: TOMJPF00008  Available University of Tsukuba
Category: Wild type cultivars
Tomato: TOMJPF00009-1  Available University of Tsukuba
Category: Wild type cultivars
Tomato: TOMJPF00012-1  Available University of Tsukuba
Category: Wild type cultivars
Tomato: TOMJPF00013-04  Available University of Tsukuba
Category: Wild type cultivars
Tomato: TOMJPF00013-49 University of Tsukuba
Category: Wild type cultivars
Tomato: TOMJPF00001  Available University of Tsukuba
Category: Wild type cultivars
Strain Type : Wild type cultivars
Taxonomy Id : Solanum lycopersicum
Reference : Naka Y, Watanabe K, Sagor GH, Niitsu M, Pillai MA, Kusano T, Takahashi Y. (2010) Quantitative analysis of plant polyamines including thermospermine during growth and salinity stress. Plant Physiol. Biochem. 48(7) 527-33
Shirasawa K, Fukuoka H, Matsunaga H, Kobayashi Y, Kobayashi I, Hirakawa H, Isobe S, Tabata S. (2013) Genome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato. DNA Res. 20(6) 593-603
Jiemeng Xu,Mieke Wolters-Arts,Celestina Mariani,Heidrun Huber,Ivo Rieu (2017) Heat stress affects vegetative and reproductive performance and trait correlations in tomato (Solanum lycopersicum) Euphytica 213 156
Xu, J., de Groot, P., Mariani, C., & Rieu, I. (2016) The involvement of reactive oxygen species in tomato pollen heat tolerance. Genetics and Physiology of Pollen Thermotolerance in Tomato 59-80
Xu, J., Wolters-Arts, M., Mariani, C., & Rieu, I. (2016) Mild heat during early flower development results in pollen abortion at late stages Genetics and Physiology of Pollen Thermotolerance in Tomato 31-58
江面 浩・廣瀬咲子・小松 晃・安東郁男・近藤始彦・有泉 亨・三浦謙治・村中俊哉・玄浩一郎・大澤 良 (2017) 農水産物のゲノム編集技術の今・未来 育種学研究 19.1 14-20
Ali ME, Ishii Y, Taniguchi JI, Waliullah S, Kobayashi K, Yaeno T, Yamaoka N, Nishiguchi M. (2018) Conferring virus resistance in tomato by independent RNA silencing of three tomato homologs of Arabidopsis TOM1. Arch. Virol. 163(5) 1357-1362
星川健、有泉亨、福田直也、久保康隆、金山喜則、矢野健太郎、青木考、江面浩 (2017) マイクロトム・トマトを基盤とした高度研究リソース 植物感染生理談話会論文集 52 15-25
沼田 圭司 (2017) 植物ゲノム編集技術の展望 ペプチド法:人工制限酵素をはじめとしたタンパク質の導入技術として 植物の生長調節 52(1) 19-24
有泉亨,伊藤康博,三浦謙治,江面浩 (2017) ゲノム編集技術のトマトへの応用・Application of genome editing technologies to tomato アグリバイオ創刊号 2017年1月号
Nagaki K, Yamaji N, Murata M. (2017) ePro-ClearSee: a simple immunohistochemical method that does not require sectioning of plant samples. Sci Rep 7 42203
Ken-ichi Honjoh, Yuri Iwaizako, Yin Lin, Nobuyuki Kijima, Takahisa Miyamoto (2016) Possibilities for Contamination of Tomato Fruit by Listeria monocytogenes during Cultivation Food Science and Technology Research 22・3 349-357
Okazaki M, Ezura H. (2009) Profiling of melatonin in the model tomato (Solanum lycopersicum L.) cultivar Micro-Tom. J. Pineal Res. 46(3) 338-43
Koike S, Matsukura C, Takayama M, Asamizu E, Ezura H. (2013) Suppression of γ-aminobutyric acid (GABA) transaminases induces prominent GABA accumulation, dwarfism and infertility in the tomato (Solanum lycopersicum L.). Plant Cell Physiol. 54(5) 793-807
Ohyama K, Okawa A, Moriuchi Y, Fujimoto Y. (2013) Biosynthesis of steroidal alkaloids in Solanaceae plants: involvement of an aldehyde intermediate during C-26 amination. Phytochemistry 89 26-31
Ejima C, Uwatoko T, Ngan BT, Honda H, Shimizu N, Kiyohara S, Hamasaki R, Sawa S (2012) SNPs of CLAVATA receptors in tomato, in the context of root-knot nematode infection. Nematological Research 41(2) 35-40
Miura K, Sato A, Shiba H, Kang SW, Kamada H, Ezura H (2012) Accumulation of antioxidants and antioxidant activity in tomato, Solanum lycopersicum, are enhanced by the transcription factor SlICE1 Plant Biotechnology. 29 261–269
Ozaki S, Ogata Y, Suda K, Kurabayashi A, Suzuki T, Yamamoto N, Iijima Y, Tsugane T, Fujii T, Konishi C, Inai S, Bunsupa S, Yamazaki M, Shibata D, Aoki K. (2010) Coexpression analysis of tomato genes and experimental verification of coordinated expression of genes found in a functionally enriched coexpression module. DNA Res. 17(2) 105-16
Miura K, Shiba H, Ohta M, Kang SW, Sato A, Yuasa T, Iwaya-Inoue M, Kamada H, Ezura H (2012) SlICE1encoding a MYC-type transcription factor controls cold tolerance in tomato, Solanum lycopersicum Plant Biotechnology. 29 253–260
Neily MH, Baldet P, Arfaoui I, Saito T, Li Q, Asamizu E, Matsukura C, Moriguchi T, Ezura H. (2011) Overexpression of apple spermidine synthase 1 (MdSPDS1) leads to significant salt tolerance in tomato plants Plant Biotechnology. 28 33-42
Tomikubo Y., Yuasa T., Iwaya-Inoue M. (2007) Analysis of chilling-induced trehalose-6-phosphate synthase (TPS) in tomato plants Cryobiology and Cryotechnology Vol. 53, No. 2 95-100
Yuasa T.,Tomokubo Y., Yamauchi A., Inoue A.,Iwaya-Inoue M. (2007) Environmental stresses activate a tomato SNF1-related protein kinase 2 homolog, SlSnRK2C Plant Biotechnology. Vol. 24, No. 4 401-408
Yuasa T., Tomikubo Y., Inoue A., Yamauchi T., Iwaya-Inoue M. (2007) Trehalose metabolism-related enzymes and a novel SNF1-related protein kinase in miniature tomato cultivar Micro-Tom (Solanum lycopersicum L.) Cryobiology and Cryotechnology Vol. 53, No. 2 13-19
Yamazaki H, Suzui N, Yin YG, Kawachi N, Ishii S, Shimada H, Fujimaki S (2015) Live-imaging evaluation of the efficacy of elevated CO 2 concentration in a closed cultivation system for the improvement of bioproduction in tomato fruits Plant Biotechnology.
Terao A, Hyodo H, Satoh S, Iwai H. (2013) Changes in the distribution of cell wall polysaccharides in early fruit pericarp and ovule, from fruit set to early fruit development, in tomato (Solanum lycopersicum). J. Plant Res. 126(5) 719-28
Kim YW, Hirai T, Kato K, Hiwasa-Tanase K, Ezura H. (2010) Gene dosage and genetic background affect miraculin accumulation in transgenic tomato fruits. Plant Biotechnology. 27(4) 333-338
Hirai T, Kim YW, Kato K, Hiwasa-Tanase K, Ezura H. (2011) Uniform accumulation of recombinant miraculin protein in transgenic tomato fruit using a fruit-ripening-specific E8 promoter. Transgenic Res. 20(6) 1285-92
Aouini A, Matsukura C, Ezura H, Asamizu E. (2012) Characterisation of 13 glutamate receptor-like genes encoded in the tomato genome by structure, phylogeny and expression profiles. Gene 493(1) 36-43
Okazaki M, Higuchi K, Hanawa Y, Shiraiwa Y, Ezura H. (2009) Cloning and characterization of a Chlamydomonas reinhardtii cDNA arylalkylamine N-acetyltransferase and its use in the genetic engineering of melatonin content in the Micro-Tom tomato. J. Pineal Res. 46(4) 373-82
Kim YW, Kato K, Hirai T, Hiwasa-Tanase K, Ezura H. (2010) Spatial and developmental profiling of miraculin accumulation in transgenic tomato fruits expressing the miraculin gene constitutively. J. Agric. Food Chem. 58(1) 282-6
Paupière MJ, Müller F, Li H, Rieu I, Tikunov YM, Visser RGF, Bovy AG. (2017) Untargeted metabolomic analysis of tomato pollen development and heat stress response. Plant Reprod 30(2) 81-94
Saito T, Ariizumi T, Okabe Y, Asamizu E, Hiwasa-Tanase K, Fukuda N, Mizoguchi T, Yamazaki Y, Aoki K, Ezura H. (2011) TOMATOMA: a novel tomato mutant database distributing Micro-Tom mutant collections. Plant Cell Physiol. 52(2) 283-96
Ariizumi T, Higuchi K, Arakaki S, Sano T, Asamizu E, Ezura H. (2011) Genetic suppression analysis in novel vacuolar processing enzymes reveals their roles in controlling sugar accumulation in tomato fruits. J. Exp. Bot. 62(8) 2773-86
Koeduka T, Shitan N, Kumano T, Sasaki K, Sugiyama A, Linley P, Kawasaki T, Ezura H, Kuzuyama T, Yazaki K. (2011) Production of prenylated flavonoids in tomato fruits expressing a prenyltransferase gene from Streptomyces coelicolor A3(2). Plant Biol (Stuttg) 13(2) 411-5
Ezura K, Ji-Seong K, Mori K, Suzuki Y, Kuhara S, Ariizumi T, Ezura H. (2017) Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum). PLoS ONE 12(7) e0180003
Hozumi A, Bera S, Fujiwara D, Obayashi T, Yokoyama R, Nishitani K, Aoki K. (2017) Arabinogalactan Proteins Accumulate in the Cell Walls of Searching Hyphae of the Stem Parasitic Plants, Cuscuta campestris and Cuscuta japonica. Plant Cell Physiol. 58(11) 1868-1877
Kusano M, Redestig H, Hirai T, Oikawa A, Matsuda F, Fukushima A, Arita M, Watanabe S, Yano M, Hiwasa-Tanase K, Ezura H, Saito K. (2011) Covering chemical diversity of genetically-modified tomatoes using metabolomics for objective substantial equivalence assessment. PLoS ONE 6(2) e16989
Sawai S, Ohyama K, Yasumoto S, Seki H, Sakuma T, Yamamoto T, Takebayashi Y, Kojima M, Sakakibara H, Aoki T, Muranaka T, Saito K, Umemoto N. (2014) Sterol side chain reductase 2 is a key enzyme in the biosynthesis of cholesterol, the common precursor of toxic steroidal glycoalkaloids in potato. Plant Cell 26(9) 3763-74
Shimatani Z, Kashojiya S, Takayama M, Terada R, Arazoe T, Ishii H, Teramura H, Yamamoto T, Komatsu H, Miura K, Ezura H, Nishida K, Ariizumi T, Kondo A. (2017) Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion. Nat. Biotechnol. 35(5) 441-443
Abdelkareem A, Thagun C, Nakayasu M, Mizutani M, Hashimoto T, Shoji T. (2017) Jasmonate-induced biosynthesis of steroidal glycoalkaloids depends on COI1 proteins in tomato. Biochem. Biophys. Res. Commun. 489(2) 206-210
Okabe Y, Asamizu E, Saito T, Matsukura C, Ariizumi T, Brès C, Rothan C, Mizoguchi T, Ezura H. (2011) Tomato TILLING technology: development of a reverse genetics tool for the efficient isolation of mutants from Micro-Tom mutant libraries. Plant Cell Physiol. 52(11) 1994-2005
Tominaga-Wada R, Nukumizu Y, Sato S, Wada T. (2013) Control of plant trichome and root-hair development by a tomato (Solanum lycopersicum) R3 MYB transcription factor. PLoS ONE 8(1) e54019
Chusreeaeom K, Ariizumi T, Asamizu E, Okabe Y, Shirasawa K, Ezura H. (2014) A novel tomato mutant, Solanum lycopersicum elongated fruit1 (Slelf1), exhibits an elongated fruit shape caused by increased cell layers in the proximal region of the ovary. Mol. Genet. Genomics 289(3) 399-409
Ariizumi T, Kishimoto S, Kakami R, Maoka T, Hirakawa H, Suzuki Y, Ozeki Y, Shirasawa K, Bernillon S, Okabe Y, Moing A, Asamizu E, Rothan C, Ohmiya A, Ezura H. (2014) Identification of the carotenoid modifying gene PALE YELLOW PETAL 1 as an essential factor in xanthophyll esterification and yellow flower pigmentation in tomato (Solanum lycopersicum). Plant J. 79(3) 453-65
Uraguchi S, Kato Y, Hanaoka H, Miwa K, Fujiwara T. (2014) Generation of boron-deficiency-tolerant tomato by overexpressing an Arabidopsis thaliana borate transporter AtBOR1. Front Plant Sci 5 125
Wada T, Kunihiro A, Tominaga-Wada R. (2014) Arabidopsis CAPRICE (MYB) and GLABRA3 (bHLH) control tomato (Solanum lycopersicum) anthocyanin biosynthesis. PLoS ONE 9(9) e109093
Ohyama K, Okawa A, Fujimoto Y. (2014) Biosynthesis of steroidal alkaloids in Solanaceae plants: incorporation of 3β-hydroxycholest-5-en-26-al into tomatine with tomato seedlings. Bioorg. Med. Chem. Lett. 24(15) 3556-8
Shirasawa K, Hirakawa H, Nunome T, Tabata S, Isobe S. (2016) Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato. Plant Biotechnol. J. 14(1) 51-60
Iwase A, Mita K, Nonaka S, Ikeuchi M, Koizuka C, Ohnuma M, Ezura H, Imamura J, Sugimoto K. (2015) WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res. 128(3) 389-97
Tsuchiya M, Satoh S, Iwai H. (2015) Distribution of XTH, expansin, and secondary-wall-related CesA in floral and fruit abscission zones during fruit development in tomato (Solanum lycopersicum). Front Plant Sci 6 323
Shinozaki Y, Hao S, Kojima M, Sakakibara H, Ozeki-Iida Y, Zheng Y, Fei Z, Zhong S, Giovannoni JJ, Rose JK, Okabe Y, Heta Y, Ezura H, Ariizumi T. (2015) Ethylene suppresses tomato (Solanum lycopersicum) fruit set through modification of gibberellin metabolism. Plant J. 83(2) 237-51
Takayama M, Koike S, Kusano M, Matsukura C, Saito K, Ariizumi T, Ezura H. (2015) Tomato Glutamate Decarboxylase Genes SlGAD2 and SlGAD3 Play Key Roles in Regulating γ-Aminobutyric Acid Levels in Tomato (Solanum lycopersicum). Plant Cell Physiol. 56(8) 1533-45
Hao S, Ariizumi T, Ezura H. (2017) SEXUAL STERILITY is Essential for Both Male and Female Gametogenesis in Tomato. Plant Cell Physiol. 58(1) 22-34
Kudo T, Kobayashi M, Terashima S, Katayama M, Ozaki S, Kanno M, Saito M, Yokoyama K, Ohyanagi H, Aoki K, Kubo Y, Yano K. (2017) TOMATOMICS: A Web Database for Integrated Omics Information in Tomato. Plant Cell Physiol. 58(1) e8
Müller F, Xu J, Kristensen L, Wolters-Arts M, de Groot PF, Jansma SY, Mariani C, Park S, Rieu I. (2016) High-Temperature-Induced Defects in Tomato (Solanum lycopersicum) Anther and Pollen Development Are Associated with Reduced Expression of B-Class Floral Patterning Genes. PLoS ONE 11(12) e0167614
Wang N, Duhita N, Ariizumi T, Ezura H. (2016) Involvement of vacuolar processing enzyme SlVPE5 in post-transcriptional process of invertase in sucrose accumulation in tomato. Plant Physiol. Biochem. 108 71-78
Kudo T, Sasaki Y, Terashima S, Matsuda-Imai N, Takano T, Saito M, Kanno M, Ozaki S, Suwabe K, Suzuki G, Watanabe M, Matsuoka M, Takayama S, Yano K. (2016) Identification of reference genes for quantitative expression analysis using large-scale RNA-seq data of Arabidopsis thaliana and model crop plants. Genes Genet. Syst. 91(2) 111-125
Fernandez-Moreno JP, Tzfadia O, Forment J, Presa S, Rogachev I, Meir S, Orzaez D, Aharoni A, Granell A. (2016) Characterization of a New Pink-Fruited Tomato Mutant Results in the Identification of a Null Allele of the SlMYB12 Transcription Factor. Plant Physiol. 171(3) 1821-36
Ueta R, Abe C, Watanabe T, Sugano SS, Ishihara R, Ezura H, Osakabe Y, Osakabe K. (2017) Rapid breeding of parthenocarpic tomato plants using CRISPR/Cas9. Sci Rep 7(1) 507
Shikata M, Ezura H. (2016) Micro-Tom Tomato as an Alternative Plant Model System: Mutant Collection and Efficient Transformation. Methods Mol. Biol. 1363 47-55
Shikata M, Hoshikawa K, Ariizumi T, Fukuda N, Yamazaki Y, Ezura H. (2016) TOMATOMA Update: Phenotypic and Metabolite Information in the Micro-Tom Mutant Resource. Plant Cell Physiol. 57(1) e11
Garcia V, Bres C, Just D, Fernandez L, Tai FW, Mauxion JP, Le Paslier MC, Bérard A, Brunel D, Aoki K, Alseekh S, Fernie AR, Fraser PD, Rothan C. (2016) Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing. Nat Protoc 11(12) 2401-2418
Kunishima M, Yamauchi Y, Mizutani M, Kuse M, Takikawa H, Sugimoto Y. (2016) Identification of (Z)-3:(E)-2-Hexenal Isomerases Essential to the Production of the Leaf Aldehyde in Plants. J. Biol. Chem. 291(27) 14023-33
Sasaki T, Tsuchiya Y, Ariyoshi M, Nakano R, Ushijima K, Kubo Y, Mori IC, Higashiizumi E, Galis I, Yamamoto Y. (2016) Two Members of the Aluminum-Activated Malate Transporter Family, SlALMT4 and SlALMT5, are Expressed during Fruit Development, and the Overexpression of SlALMT5 Alters Organic Acid Contents in Seeds in Tomato (Solanum lycopersicum). Plant Cell Physiol. 57(11) 2367-2379
Lu Y, Yasuda S, Li X, Fukao Y, Tohge T, Fernie AR, Matsukura C, Ezura H, Sato T, Yamaguchi J. (2016) Characterization of ubiquitin ligase SlATL31 and proteomic analysis of 14-3-3 targets in tomato fruit tissue (Solanum lycopersicum L.). J Proteomics 143 254-264
Thagun C, Imanishi S, Kudo T, Nakabayashi R, Ohyama K, Mori T, Kawamoto K, Nakamura Y, Katayama M, Nonaka S, Matsukura C, Yano K, Ezura H, Saito K, Hashimoto T, Shoji T. (2016) Jasmonate-Responsive ERF Transcription Factors Regulate Steroidal Glycoalkaloid Biosynthesis in Tomato. Plant Cell Physiol. 57(5) 961-75
Nonaka S, Arai C, Takayama M, Matsukura C, Ezura H. (2017) Efficient increase of ɣ-aminobutyric acid (GABA) content in tomato fruits by targeted mutagenesis. Sci Rep 7(1) 7057
Nakayasu M, Umemoto N, Ohyama K, Fujimoto Y, Lee HJ, Watanabe B, Muranaka T, Saito K, Sugimoto Y, Mizutani M. (2017) A Dioxygenase Catalyzes Steroid 16α-Hydroxylation in Steroidal Glycoalkaloid Biosynthesis. Plant Physiol. 175(1) 120-133
Niwa T, Suzuki T, Takebayashi Y, Ishiguro R, Higashiyama T, Sakakibara H, Ishiguro S. (2018) Jasmonic acid facilitates flower opening and floral organ development through the upregulated expression of SlMYB21 transcription factor in tomato. Biosci. Biotechnol. Biochem. 82(2) 292-303
Yamamoto T, Hoshikawa K, Ezura K, Okazawa R, Fujita S, Takaoka M, Mason HS, Ezura H, Miura K. (2018) Improvement of the transient expression system for production of recombinant proteins in plants. Sci Rep 8(1) 4755
Wang N, Chen H, Nonaka S, Sato-Izawa K, Kusano M, Ezura H. (2018) Ethylene biosynthesis controlled by NON-RIPENING: A regulatory conflict between wounding and ripening. Plant Physiol. Biochem.
Mashiguchi K, Hisano H, Takeda-Kamiya N, Takebayashi Y, Ariizumi T, Gao Y, Ezura H, Sato K, Zhao Y, Hayashi KI, Kasahara H. (2018) Agrobacterium tumefaciens enhances biosynthesis of two distinct auxins in the formation of crown galls. Plant Cell Physiol.
Shoko Hasegawa , Takuya Tsutsumi , Shunsuke Fukushima , Yoshihiro Okabe , Junna Saito , Mina Katayama , Masato Shindo , Yusuke Yamada , Koichiro Shimomura , Kaori Yoneyama , Kohki Akiyama , Koh Aoki , Tohru Ariizumi , Hiroshi Ezura , Shinjiro Yamaguchi and Mikihisa Umehara (2018) Low Infection of Phelipanche aegyptiaca in Micro-Tom Mutants Deficient in CAROTENOID CLEAVAGE DIOXYGENASE 8 Int. J. Mol. Sci. 19(9) 2645
Okabe Y, Yamaoka T, Ariizumi T, Ushijima K, Kojima M, Takebayashi Y, Sakakibara H, Kusano M, Shinozaki Y, Pulungan SI, Kubo Y, Nakano R, Ezura H. (2018) Aberrant Stamen Development is Associated with Parthenocarpic Fruit Set through Up-regulation of Gibberellin Biosynthesis in Tomato. Plant Cell Physiol.
Shinozaki Y, Ezura K, Hu J, Okabe Y, Bénard C, Prodhomme D, Gibon Y, Sun TP, Ezura H, Ariizumi T. (2018) Identification and functional study of a mild allele of SlDELLA gene conferring the potential for improved yield in tomato. Sci Rep 8(1) 12043
Akihiro T, Koike S, Tani R, Tominaga T, Watanabe S, Iijima Y, Aoki K, Shibata D, Ashihara H, Matsukura C, Akama K, Fujimura T, Ezura H. (2008) Biochemical mechanism on GABA accumulation during fruit development in tomato. Plant Cell Physiol. 49(9) 1378-89
Aoki K, Yano K, Suzuki A, Kawamura S, Sakurai N, Suda K, Kurabayashi A, Suzuki T, Tsugane T, Watanabe M, Ooga K, Torii M, Narita T, Shin-I T, Kohara Y, Yamamoto N, Takahashi H, Watanabe Y, Egusa M, Kodama M, Ichinose Y, Kikuchi M, Fukushima S, Okabe A, Arie T, Sato Y, Yazawa K, Satoh S, Omura T, Ezura H, Shibata D. (2010) Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics 11 210
Neily MH, Matsukura C, Maucourt M, Bernillon S, Deborde C, Moing A, Yin YG, Saito T, Mori K, Asamizu E, Rolin D, Moriguchi T, Ezura H. (2011) Enhanced polyamine accumulation alters carotenoid metabolism at the transcriptional level in tomato fruit over-expressing spermidine synthase. J. Plant Physiol. 168(3) 242-52
Yin YG, Tominaga T, Iijima Y, Aoki K, Shibata D, Ashihara H, Nishimura S, Ezura H, Matsukura C. (2010) Metabolic alterations in organic acids and gamma-aminobutyric acid in developing tomato (Solanum lycopersicum L.) fruits. Plant Cell Physiol. 51(8) 1300-14
Hiwasa-Tanase K, Nyarubona M, Hirai T, Kato K, Ichikawa T, Ezura H. (2011) High-level accumulation of recombinant miraculin protein in transgenic tomatoes expressing a synthetic miraculin gene with optimized codon usage terminated by the native miraculin terminator. Plant Cell Rep. 30(1) 113-24
Okazaki M, Higuchi K, Aouini A, Ezura H. (2010) Lowering intercellular melatonin levels by transgenic analysis of indoleamine 2,3-dioxygenase from rice in tomato plants. J. Pineal Res. 49(3) 239-47
Kurokawa N, Hirai T, Takayama M, Hiwasa-Tanase K, Ezura H. (2013) An E8 promoter-HSP terminator cassette promotes the high-level accumulation of recombinant protein predominantly in transgenic tomato fruits: a case study of miraculin. Plant Cell Rep. 32(4) 529-36
Aoki K, Ogata Y, Igarashi K, Yano K, Nagasaki H, Kaminuma E, Toyoda A. (2013) Functional genomics of tomato in a post-genome-sequencing phase. Breed. Sci. 63(1) 14-20
Hyodo H, Terao A, Furukawa J, Sakamoto N, Yurimoto H, Satoh S, Iwai H. (2013) Tissue specific localization of pectin-Ca²⁺ cross-linkages and pectin methyl-esterification during fruit ripening in tomato (Solanum lycopersicum). PLoS ONE 8(11) e78949
Kobayashi M, Nagasaki H, Garcia V, Just D, Bres C, Mauxion JP, Le Paslier MC, Brunel D, Suda K, Minakuchi Y, Toyoda A, Fujiyama A, Toyoshima H, Suzuki T, Igarashi K, Rothan C, Kaminuma E, Nakamura Y, Yano K, Aoki K. (2014) Genome-wide analysis of intraspecific DNA polymorphism in ''Micro-Tom'', a model cultivar of tomato (Solanum lycopersicum). Plant Cell Physiol. 55(2) 445-54
Reuscher S, Akiyama M, Mori C, Aoki K, Shibata D, Shiratake K. (2013) Genome-wide identification and expression analysis of aquaporins in tomato. PLoS ONE 8(11) e79052
Takizawa A, Hyodo H, Wada K, Ishii T, Satoh S, Iwai H. (2014) Regulatory specialization of xyloglucan (XG) and glucuronoarabinoxylan (GAX) in pericarp cell walls during fruit ripening in tomato (Solanum lycopersicum). PLoS ONE 9(2) e89871
Hirakawa H, Shirasawa K, Ohyama A, Fukuoka H, Aoki K, Rothan C, Sato S, Isobe S, Tabata S. (2013) Genome-wide SNP genotyping to infer the effects on gene functions in tomato. DNA Res. 20(3) 221-33
Huang YX, Yin YG, Sanuki A, Fukuda N, Ezura H, Matsukura C. (2015) Phosphoenolpyruvate carboxykinase (PEPCK) deficiency affects the germination, growth and fruit sugar content in tomato (Solanum lycopersicum L.). Plant Physiol. Biochem. 96 417-25
Ekawa M, Aoki K. (2017) Phloem-Conducting Cells in Haustoria of the Root-Parasitic Plant Phelipanche aegyptiaca Retain Nuclei and Are Not Mature Sieve Elements. Plants (Basel) 6(4)
Lee J, Nonaka S, Takayama M, Ezura H. (2018) Utilization of a Genome-Edited Tomato (Solanum lycopersicum) with High Gamma Aminobutyric Acid Content in Hybrid Breeding. J. Agric. Food Chem. 66(4) 963-971
Suekawa M, Fujikawa Y, Esaka M. (2018) Two G-box-like elements essential to high gene expression of SlAKR4B in tomato leaves. Biosci. Biotechnol. Biochem. 82(3) 425-432
Nakayasu M, Shioya N, Shikata M, Thagun C, Abdelkareem A, Okabe Y, Ariizumi T, Arimura GI, Mizutani M, Ezura H, Hashimoto T, Shoji T. (2018) JRE4 is a master transcriptional regulator of defense-related steroidal glycoalkaloids in tomato. Plant J. 94(6) 975-990
Nakano T, Tanaka S, Ohtani M, Yamagami A, Takeno S, Hara N, Mori A, Nakano A, Hirose S, Himuro Y, Kobayashi M, Kushiro T, Demura T, Asami T, Osada H, Shinozaki K. (2018) FPX is a Novel Chemical Inducer that Promotes Callus Formation and Shoot Regeneration in Plants. Plant Cell Physiol. 59(8) 1555-1567
Ofori PA, Mizuno A, Suzuki M, Martinoia E, Reuscher S, Aoki K, Shibata D, Otagaki S, Matsumoto S, Shiratake K. (2018) Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato. PLoS ONE 13(7) e0200854
Ofori PA, Geisler M, di Donato M, Pengchao H, Otagaki S, Matsumoto S, Shiratake K. (2018) Tomato ATP-Binding Cassette Transporter SlABCB4 Is Involved in Auxin Transport in the Developing Fruit. Plants (Basel) 7(3)
Tomato: TOMJPF00010-1 University of Tsukuba
Category: Wild type cultivars
Tomato: EMS bulk set C  Available University of Tsukuba
Category: EMS and gamma irradiation-induced mutant lines
DNA List 7 items 1 - 7 / 7
Tomato: LEFL2003DB10  Available Kazusa DNA Research Institute
Category: LEFL2
Tomato: LEFL2031I14  Available Kazusa DNA Research Institute
Category: LEFL2
Tomato: LEFL2003DB10  Available Kazusa DNA Research Institute
Category: LEFL2
Tomato: LEFL1025BA08  Available Kazusa DNA Research Institute
Category: LEFL1
Library : LEFL1
Category : EST
Origin : Leaf
Note : pathogen-treated; Other treatment ; JA treatment, SA treatment
Viruses : CMV ToMV
Fungi : Pythium oligandrum (PO),Nonpathogenic Alternaria alternata,Corynespora cassiicola,Cladosporium fulvum,Fusarium oxysporum f. sp. lycoperrsici,Non-pathogenic Fusarium oxyspor
Bacteria : P. s. pv. tomato DC3000,P. s. pv. tabaci 660
Accession Number : DB686070
Taxonomy : Solanum lycopersicum
Reference : Yasumoto S, Seki H, Shimizu Y, Fukushima EO, Muranaka T. (2017) Functional Characterization of CYP716 Family P450 Enzymes in Triterpenoid Biosynthesis in Tomato. Front Plant Sci 8 21
Tomato: LEFL1025BA08  Available Kazusa DNA Research Institute
Category: LEFL1
Library : LEFL1
Category : HTC
Origin : Leaf
Note : pathogen-treated; Other treatment ; JA treatment, SA treatment
Viruses : CMV ToMV
Fungi : Pythium oligandrum (PO),Nonpathogenic Alternaria alternata,Corynespora cassiicola,Cladosporium fulvum,Fusarium oxysporum f. sp. lycoperrsici,Non-pathogenic Fusarium oxyspor
Bacteria : P. s. pv. tomato DC3000,P. s. pv. tabaci 660
Accession Number : AK321479
Taxonomy : Solanum lycopersicum
Reference : Yasumoto S, Seki H, Shimizu Y, Fukushima EO, Muranaka T. (2017) Functional Characterization of CYP716 Family P450 Enzymes in Triterpenoid Biosynthesis in Tomato. Front Plant Sci 8 21
Tomato: LEFL3159E12  Available Kazusa DNA Research Institute
Category: LEFL3
Library : LEFL3
Category : EST
Origin : Root
Note : Roots of tomato with/without flower,Fusarium-treated root
Accession Number : FS204077
Taxonomy : Solanum lycopersicum
Reference : Yasumoto S, Seki H, Shimizu Y, Fukushima EO, Muranaka T. (2017) Functional Characterization of CYP716 Family P450 Enzymes in Triterpenoid Biosynthesis in Tomato. Front Plant Sci 8 21
Tomato: LEFL3159E12  Available Kazusa DNA Research Institute
Category: LEFL3
Library : LEFL3
Category : HTC
Origin : Root
Note : Roots of tomato with/without flower,Fusarium-treated root
Accession Number : AK329870
Taxonomy : Solanum lycopersicum
Reference : Yasumoto S, Seki H, Shimizu Y, Fukushima EO, Muranaka T. (2017) Functional Characterization of CYP716 Family P450 Enzymes in Triterpenoid Biosynthesis in Tomato. Front Plant Sci 8 21