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Chrysanthemum
Algae
Lotus
Glycine
E. coli
Yeast
Pathogenic Microorganisms
Macaca fuscata
Animal / Human cells
Embryonic stem cell
other bacteria
Virus
Bacillus subtilis
Cellular slime molds
Tomato
Ciona Intestinalis
General Microbes
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Tabs(ALL, DNA, BLAST, GO) are clickable.
Sequence count : 3,843,649
Program
blastn (DNA query vs. DNA database)
tblastx (DNA query[translated into protein] vs. DNA database[translated into protein])
tblastn (Protein query vs. DNA database[translated into protein])
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Options for BLAST Search
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Query Genetic Codes
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
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Matrix
PAM30
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BLOSUM80
BLOSUM62
BLOSUM45
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Options for BLASTScope
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definition
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BioResource Databases (All clones are available)
ALL
EST/cDNA
C. elegans
Drosophila
( 190,096 )
auraria adult cDNA clone
sechellia adult cDNA clone
simulans adult cDNA clone
simulans larvae cDNA clone
Medakafish
( 228,014 )
Adult male Liver cDNA clone
ST22 Embryo cDNA clone
ST35 Embryo cDNA clone
ST40 Fry cDNA clone
Adult Brain cDNA clone
Adult female Ovary cDNA clone
Adult males Testis
Gill
Kidney
Female liver
Spleen
Mouse
( 78,174 )
NIA Mouse 7.4K and NIA/NIH Mouse 15K cDNA clones
1-cell Unfertilized Egg
1-cell Fertilized Egg
2-cell Embryo
4-cell Embryo
8-cell Embryo
16-cell Embryo
3.5-dpc Blastocyst
HMI/Ms cDNA
KJR/Ms cDNA
MSM/Ms cDNA
PGN2/Ms cDNA
Silkworm
( 20,635 )
bmmt
bmnc
bmov
bmte
fcaL
fmgV
fner
Xenopus
( 327,994 )
X.laevis/anterior neroctoderm
X.laevis/Keller explants
X.tropicalis/embryo
X.laevis/anterior endomesoderm
X.laevis/whole embryo(stage 25)
X.laevis/whole embryo(stage 10.5)
Arabidopsis(Plant cells, Gene)
( 343,983 )
Arabidopsis cDNA clones
Physcomitrella patens cDNA clones
Poplar cDNA clones
Tobacco ESTs
many plants cDNA
Barley
( 139,933 )
Haruna Nijo, germination, shoots ESTs
Haruna Nijo, second leaf stage, seedling leaves ESTs
Haruna Nijo, adult or heading stage, top three leaves ESTs
Akashinriki, vegetative stage, leaves ESTs
H602, adult or heading stage, top three leaves ESTs
Haruna Nijo, Seedling, Shoot ESTs
Haruna Nijo, Germination, Root ESTs
Haruna Nijo, Germination, Shoot ESTs
Haruna Nijo full-length cDNA
Glycine
Lotus
( 97,223 )
cDNA clones
Morning Glory
( 62,235 )
ESTs
flower and bud mix
old seedling
Tomato
( 59,690 )
Fruit / maturing fruits ESTs
Fruit / IMG, MG, Orange, Red stages ESTs
Leaf / pathogen-treated ESTs
Roots of tomato with/without flower, Fusarium-treated root
Wheat
( 556,545 )
ESTs
Animal / Human cells
Cellular slime molds
( 5,499 )
cDNA
Yeast
Genomic DNA
Drosophila
( 72,127 )
ananassae
auraria
melanogaster
sechellia
simulans
Macaca fuscata
( 167,159 )
BAC clone
Medakafish
( 551,547 )
BAC clone
Fosmid clone
Mouse
( 337,468 )
MSM/Ms Mouse BAC clone
B6N Mouse BAC clone
Rat
( 558,758 )
Rattus norvegicus F344/Stm
Rattus norvegicus LE/Stm
Lotus
( 46,569 )
BAC clones
TAC clones
Animal / Human cells
Virus
Yeast
other bacteria
National BioResource Project
Contact us
Tabs(ALL, DNA, BLAST, GO) are clickable.
