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DNA
BLAST
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Disease Ontology
Reference
Sequence count : 4,741,112

Program

blastn (DNA query vs. DNA database)
tblastx (DNA query[translated into protein] vs. DNA database[translated into protein])
tblastn (Protein query vs. DNA database[translated into protein])

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Options for BLAST Search

Filter Query Genetic Codes
Expect Frame shift penalty
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Matrix  
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Options for BLASTScope

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Number of Hits : All Hits   Limit : Hits
Number of HSPs : All HSPs   Limit : HSPs
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BioResource Databases (All clones are available)
ALL
  • EST/cDNA
    • Mouse ( 78,174 )
      • NIA Mouse 7.4K and NIA/NIH Mouse 15K cDNA clones
      • 1-cell Unfertilized Egg
      • 1-cell Fertilized Egg
      • 2-cell Embryo
      • 4-cell Embryo
      • 8-cell Embryo
      • 16-cell Embryo
      • 3.5-dpc Blastocyst
      • HMI/Ms cDNA
      • KJR/Ms cDNA
      • MSM/Ms cDNA
      • PGN2/Ms cDNA
    • Drosophila ( 190,096 )
      • auraria adult cDNA clone
      • sechellia adult cDNA clone
      • simulans adult cDNA clone
      • simulans larvae cDNA clone
    • C. elegans
    • Silkworm ( 20,635 )
      • bmmt
      • bmnc
      • bmov
      • bmte
      • fcaL
      • fmgV
      • fner
    • Medakafish ( 228,014 )
      • Adult male Liver cDNA clone
      • ST22 Embryo cDNA clone
      • ST35 Embryo cDNA clone
      • ST40 Fry cDNA clone
      • Adult Brain cDNA clone
      • Adult female Ovary cDNA clone
      • Adult males Testis
      • Gill
      • Kidney
      • Female liver
      • Spleen
      • Liver library
      • Female whole body library
      • Fry full-length library
      • Fry library
      • Embryo library
      • adult male and female whole body
      • cultured cell
      • cultured cell with 20J/m2 UV ± PR
      • Ovary
      • Liver from male and female
      • cultured cell with γ-irrdiation
      • 7 day embryos
      • Fry just after hatching
      • Adult ovary
      • Fry 5 day old after hatching
      • Fry 10 day old after hatching
      • Fry 15 day old after hatching
      • 241920 entries
    • Oxycomanthus japonicus
    • Xenopus ( 327,994 )
      • X.laevis/anterior neroctoderm
      • X.laevis/Keller explants
      • X.tropicalis/embryo
      • X.laevis/anterior endomesoderm
      • X.laevis/whole embryo(stage 25)
      • X.laevis/whole embryo(stage 10.5)
    • Arabidopsis(Plant cells, Gene) ( 625,394 )
      • Arabidopsis cDNA clones
      • Physcomitrella patens cDNA clones
      • Poplar cDNA clones
      • Tobacco ESTs
      • many plants cDNA
      • Cassava full-length cDNA clones
      • T. halophila full-length cDNA clones
      • B. rapa full-length cDNA clones
      • Striga hermonthica full-length cDNA clones
      • Brachypodium distachyon full-length cDNA
    • Wheat ( 562,707 )
      • ESTs
    • Barley ( 139,933 )
      • Haruna Nijo, germination, shoots ESTs
      • Haruna Nijo, second leaf stage, seedling leaves ESTs
      • Haruna Nijo, adult or heading stage, top three leaves ESTs
      • Akashinriki, vegetative stage, leaves ESTs
      • H602, adult or heading stage, top three leaves ESTs
      • Haruna Nijo, Seedling, Shoot ESTs
      • Haruna Nijo, Germination, Root ESTs
      • Haruna Nijo, Germination, Shoot ESTs
      • Haruna Nijo full-length cDNA
    • Morning Glory ( 62,235 )
      • ESTs
      • flower and bud mix
      • old seedling
    • Lotus ( 185,293 )
      • cDNA clones
      • LjFLcDNA clones
    • Glycine ( 73,373 )
      • full-length cDNA clone
    • Tomato ( 59,690 )
      • Fruit / maturing fruits ESTs
      • Fruit / IMG, MG, Orange, Red stages ESTs
      • Leaf / pathogen-treated ESTs
      • Roots of tomato with/without flower, Fusarium-treated root
    • Cellular slime molds ( 5,499 )
      • cDNA
    • E. coli
    • Yeast ( 101,079 )
      • Full length cDNA library
    • Animal / Human cells
    • DNA material
      • Mouse cDNA
      • S. pombe cDNA
      • Human cDNA
  • Genomic DNA
    • Mouse ( 468,975 )
      • MSM/Ms Mouse BAC clone
      • B6N Mouse BAC clone
    • Rat ( 558,758 )
      • Rattus norvegicus F344/Stm
      • Rattus norvegicus LE/Stm
    • Drosophila ( 72,127 )
      • ananassae
      • auraria
      • melanogaster
      • sechellia
      • simulans
    • Medakafish ( 551,547 )
      • BAC clone
      • Fosmid clone
    • Macaca fuscata ( 167,159 )
      • BAC clone
    • Lotus ( 46,569 )
      • BAC clones
      • TAC clones
      • Mesorhizobium plasmid clone
    • Glycine ( 8,622 )
      • Bradyrhizobium BAC clone
      • Bradyrhizobium cosmid clone
    • Tomato ( 93,682 )
      • BAC Clone derived from Micro-Tom
    • Yeast ( 113,551 )
      • Fission yeast genomic DNA clone
    • Virus
    • Animal / Human cells
    • other bacteria