 Tabs(ALL, DNA, BLAST, GO, Taxonomy, DO, Reference) are clickable.
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Reference Related Resource Count: 23,108
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Associated Resources List
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Category: Transgenics
| Allele : |
rw0 |
| Information : |
GFP expression in the hindbrain motor neurons. (Previous Name) Tg (CM-ICP:GFP) |
| Publications : |
Higashijima S et al (2000) J. Neurosci. 20(1),206-18 |
| Taxonomy : |
Siluriformes
|
| Reference : |
Gan-Or Z, Bouslam N, Birouk N, Lissouba A, Chambers DB, Vérièpe J, Androschuk A, Laurent SB, Rochefort D, Spiegelman D, Dionne-Laporte A, Szuto A, Liao M, Figlewicz DA, Bouhouche A, Benomar A, Yahyaoui M, Ouazzani R, Yoon G, Dupré N, Suchowersky O, Bolduc FV, Parker JA, Dion PA, Drapeau P, Rouleau GA, Ouled Amar Bencheikh B. (2016) Mutations in CAPN1 Cause Autosomal-Recessive Hereditary Spastic Paraplegia. Am J Hum Genet 98(6) 1271
Rebman JK, Kirchoff KE, Walsh GS. (2016) Cadherin-2 Is Required Cell Autonomously for Collective Migration of Facial Branchiomotor Neurons. PLoS One 11(10) e0164433
Turner KJ, Hawkins TA, Yáñez J, Anadón R, Wilson SW, Folgueira M. (2016) Afferent Connectivity of the Zebrafish Habenulae. Front Neural Circuits 10 30
Chen L, Watson C, Morsch M, Cole NJ, Chung RS, Saunders DN, Yerbury JJ, Vine KL. (2017) Improving the Delivery of SOD1 Antisense Oligonucleotides to Motor Neurons Using Calcium Phosphate-Lipid Nanoparticles. Front Neurosci 11 476
Schoppik D, Bianco IH, Prober DA, Douglass AD, Robson DN, Li JMB, Greenwood JSF, Soucy E, Engert F, Schier AF. (2017) Gaze-Stabilizing Central Vestibular Neurons Project Asymmetrically to Extraocular Motoneuron Pools. J Neurosci 37(47) 11353-11365
Yang CH, Yeh YJ, Wang JY, Liu YW, Chen YL, Cheng HW, Cheng CM, Chuang YJ, Yuh CH, Chen YR. (2017) NEAP/DUSP26 suppresses receptor tyrosine kinases and regulates neuronal development in zebrafish. Sci Rep 7(1) 5241
Gupta T, Marquart GD, Horstick EJ, Tabor KM, Pajevic S, Burgess HA. (2018) Morphometric analysis and neuroanatomical mapping of the zebrafish brain. Methods 150 49-62
Gauron C, Meda F, Dupont E, Albadri S, Quenech''Du N, Ipendey E, Volovitch M, Del Bene F, Joliot A, Rampon C, Vriz S. (2016) Hydrogen peroxide (H2O2) controls axon pathfinding during zebrafish development. Dev Biol 414(2) 133-41
Giunta M, Edvardson S, Xu Y, Schuelke M, Gomez-Duran A, Boczonadi V, Elpeleg O, Müller JS, Horvath R. (2016) Altered RNA metabolism due to a homozygous RBM7 mutation in a patient with spinal motor neuropathy. Hum Mol Genet 25(14) 2985-2996
Greaney MR, Privorotskiy AE, D''Elia KP, Schoppik D. (2017) Extraocular motoneuron pools develop along a dorsoventral axis in zebrafish, Danio rerio. J Comp Neurol 525(1) 65-78
McCammon JM, Blaker-Lee A, Chen X, Sive H. (2017) The 16p11.2 homologs fam57ba and doc2a generate certain brain and body phenotypes. Hum Mol Genet 26(19) 3699-3712
Moreno RL, Josey M, Ribera AB. (2017) Zebrafish In Situ Spinal Cord Preparation for Electrophysiological Recordings from Spinal Sensory and Motor Neurons. J Vis Exp (122)
Morsch M, Radford RA, Don EK, Lee A, Hortle E, Cole NJ, Chung RS. (2017) Triggering Cell Stress and Death Using Conventional UV Laser Confocal Microscopy. J Vis Exp (120)
Sebe JY, Cho S, Sheets L, Rutherford MA, von Gersdorff H, Raible DW. (2017) Ca
Thomas-Jinu S, Gordon PM, Fielding T, Taylor R, Smith BN, Snowden V, Blanc E, Vance C, Topp S, Wong CH, Bielen H, Williams KL, McCann EP, Nicholson GA, Pan-Vazquez A, Fox AH, Bond CS, Talbot WS, Blair IP, Shaw CE, Houart C. (2017) Non-nuclear Pool of Splicing Factor SFPQ Regulates Axonal Transcripts Required for Normal Motor Development. Neuron 94(2) 322-336.e5
Yin C, Fufa T, Chandrasekar G, Aeluri M, Zaky V, Abdelhady S, Rodríguez AB, Jakobsson J, Varnoosfaderani FS, Mahalingam J, Liu J, Larsson O, Hovatta O, Gaunitz F, Göndör A, Andäng M, Kitambi SS. (2017) Phenotypic Screen Identifies a Small Molecule Modulating ERK2 and Promoting Stem Cell Proliferation. Front Pharmacol 8 726
Bremer J, Skinner J, Granato M. (2017) A small molecule screen identifies in vivo modulators of peripheral nerve regeneration in zebrafish. PLoS One 12(6) e0178854
Acosta JR, Watchon M, Yuan KC, Fifita JA, Svahn AJ, Don EK, Winnick CG, Blair IP, Nicholson GA, Cole NJ, Goldsbury C, Laird AS. (2018) Neuronal cell culture from transgenic zebrafish models of neurodegenerative disease. Biol Open 7(10)
Burns DT, Donkervoort S, Müller JS, Knierim E, Bharucha-Goebel D, Faqeih EA, Bell SK, AlFaifi AY, Monies D, Millan F, Retterer K, Dyack S, MacKay S, Morales-Gonzalez S, Giunta M, Munro B, Hudson G, Scavina M, Baker L, Massini TC, Lek M, Hu Y, Ezzo D, AlKuraya FS, Kang PB, Griffin H, Foley AR, Schuelke M, Horvath R, Bönnemann CG. (2018) Variants in EXOSC9 Disrupt the RNA Exosome and Result in Cerebellar Atrophy with Spinal Motor Neuronopathy. Am J Hum Genet 102(5) 858-873
Fassier C, Fréal A, Gasmi L, Delphin C, Ten Martin D, De Gois S, Tambalo M, Bosc C, Mailly P, Revenu C, Peris L, Bolte S, Schneider-Maunoury S, Houart C, Nothias F, Larcher JC, Andrieux A, Hazan J. (2018) Motor axon navigation relies on Fidgetin-like 1-driven microtubule plus end dynamics. J Cell Biol 217(5) 1719-1738
Goldshmit Y, Tang JKKY, Siegel AL, Nguyen PD, Kaslin J, Currie PD, Jusuf PR. (2018) Different Fgfs have distinct roles in regulating neurogenesis after spinal cord injury in zebrafish. Neural Dev 13(1) 24
Gurung S, Asante E, Hummel D, Williams A, Feldman-Schultz O, Halloran MC, Sittaramane V, Chandrasekhar A. (2018) Distinct roles for the cell adhesion molecule Contactin2 in the development and function of neural circuits in zebrafish. Mech Dev 152 1-12
Selland LG, Koch S, Laraque M, Waskiewicz AJ. (2018) Coordinate regulation of retinoic acid synthesis by pbx genes and fibroblast growth factor signaling by hoxb1b is required for hindbrain patterning and development. Mech Dev 150 28-41
O''Connor E, Töpf A, Müller JS, Cox D, Evangelista T, Colomer J, Abicht A, Senderek J, Hasselmann O, Yaramis A, Laval SH, Lochmüller H. (2016) Identification of mutations in the MYO9A gene in patients with congenital myasthenic syndrome. Brain 139(Pt 8) 2143-53
Marquart GD, Tabor KM, Horstick EJ, Brown M, Geoca AK, Polys NF, Nogare DD, Burgess HA. (2017) High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization. Gigascience 6(8) 1-15
Allen JR, Bhattacharyya KD, Asante E, Almadi B, Schafer K, Davis J, Cox J, Voigt M, Viator JA, Chandrasekhar A. (2017) Role of branchiomotor neurons in controlling food intake of zebrafish larvae. J Neurogenet 31(3) 128-137
McArthur KL, Fetcho JR. (2017) Key Features of Structural and Functional Organization of Zebrafish Facial Motor Neurons Are Resilient to Disruption of Neuronal Migration. Curr Biol 27(12) 1746-1756.e5
Sassen WA, Lehne F, Russo G, Wargenau S, Dübel S, Köster RW. (2017) Embryonic zebrafish primary cell culture for transfection and live cellular and subcellular imaging. Dev Biol 430(1) 18-31
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Category: Transgenics
Category: Transgenics
| Allele : |
rw0110b |
| Information : |
GFP expression at brn3a-positive tissues |
| Publications : |
Aizawa H et al (2005) Curr. Biol. 15(3),238-43 |
| Taxonomy : |
Siluriformes
|
| Reference : |
Chou MY, Amo R, Kinoshita M, Cherng BW, Shimazaki H, Agetsuma M, Shiraki T, Aoki T, Takahoko M, Yamazaki M, Higashijima S, Okamoto H. (2016) Social conflict resolution regulated by two dorsal habenular subregions in zebrafish. Science 352(6281) 87-90
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Category: Transgenics
Category: Transgenics
Category: Transgenics
Category: Transgenics
| Allele : |
cf2 |
| Information : |
"all neuronal cells express cameleon2.1, a calcium indicator generated based on GFP, under the control of the HuC promoter"Method for Generation: plasmid |
| Publications : |
Higashijima S et al (2003) J. Neurophysiol. 90(6),3986-97 |
| Taxonomy : |
Siluriformes
|
| Reference : |
Yao Y, Li X, Zhang B, Yin C, Liu Y, Chen W, Zeng S, Du J. (2016) Visual Cue-Discriminative Dopaminergic Control of Visuomotor Transformation and Behavior Selection. Neuron 89(3) 598-612
Xu B, Zhang Y, Du XF, Li J, Zi HX, Bu JW, Yan Y, Han H, Du JL. (2017) Neurons secrete miR-132-containing exosomes to regulate brain vascular integrity. Cell Res 27(7) 882-897
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Category: Transgenics
| Allele : |
nns1 |
| Information : |
Transgenic zebrafish that express EGFP under the control of the alx promoter/enhancer.Method for Generation: BAC, ISceI |
| Publications : |
Kimura Y et al (2006) J. Neurosci. 26(21),5684-97 |
| Taxonomy : |
Siluriformes
|
| Reference : |
Seredick S, Hutchinson SA, Van Ryswyk L, Talbot JC, Eisen JS. (2014) Lhx3 and Lhx4 suppress Kolmer-Agduhr interneuron characteristics within zebrafish axial motoneurons. Development 141(20) 3900-9
Van Ryswyk L, Simonson L, Eisen JS. (2014) The role of inab in axon morphology of an identified zebrafish motoneuron. PLoS One 9(2) e88631
Reinoß P, Ciglieri E, Minére M, Bremser S, Klein A, Löhr H, Fuller PM, Büschges A, Kloppenburg P, Fenselau H, Hammerschmidt M. (2020) Hypothalamic Pomc Neurons Innervate the Spinal Cord and Modulate the Excitability of Premotor Circuits. Curr Biol 30(23) 4579-4593.e7
Stil A, Drapeau P. (2016) Neuronal labeling patterns in the spinal cord of adult transgenic Zebrafish. Dev Neurobiol 76(6) 642-60
Engerer P, Petridou E, Williams PR, Suzuki SC, Yoshimatsu T, Portugues R, Misgeld T, Godinho L. (2021) Notch-mediated re-specification of neuronal identity during central nervous system development. Curr Biol 31(21) 4870-4878.e5
Wu MY, Carbo-Tano M, Mirat O, Lejeune FX, Roussel J, Quan FB, Fidelin K, Wyart C. (2021) Spinal sensory neurons project onto the hindbrain to stabilize posture and enhance locomotor speed. Curr Biol 31(15) 3315-3329.e5
Chang W, Pedroni A, Bertuzzi M, Kizil C, Simon A, Ampatzis K. (2021) Locomotion dependent neuron-glia interactions control neurogenesis and regeneration in the adult zebrafish spinal cord. Nat Commun 12(1) 4857
Guan NN, Xu L, Zhang T, Huang CX, Wang Z, Dahlberg E, Wang H, Wang F, Pallucchi I, Hua Y, El Manira A, Song J. (2021) A specialized spinal circuit for command amplification and directionality during escape behavior. Proc Natl Acad Sci U S A 118(42)
Roussel Y, Paradis M, Gaudreau SF, Lindsey BW, Bui TV. (2020) Spatiotemporal Transition in the Role of Synaptic Inhibition to the Tail Beat Rhythm of Developing Larval Zebrafish. eNeuro 7(1)
Evdokia Menelaou, Sandeep Kishore, David L McLean (2022) Mixed synapses reconcile violations of the size principle in zebrafish spinal cord eLife 11
Chun-Xiao Huang, Zhen Wang, Jianwei Cheng, Zhiqiang Zhu, Na N. Guan, Jianren Song (2022) De novo establishment of circuit modules restores locomotion after spinal cord injury in adult zebrafish Cell Reports 41 111535
Saul Bello-Rojas, Martha W Bagnall (2022) Clonally related, Notch-differentiated spinal neurons integrate into distinct circuits eLife 11
Pujala A, Koyama M. (2019) Chronology-based architecture of descending circuits that underlie the development of locomotor repertoire after birth. Elife 8
Kinkhabwala A, Riley M, Koyama M, Monen J, Satou C, Kimura Y, Higashijima S, Fetcho J. (2011) A structural and functional ground plan for neurons in the hindbrain of zebrafish. Proc Natl Acad Sci U S A 108(3) 1164-9
Ampatzis K, Song J, Ausborn J, El Manira A. (2014) Separate microcircuit modules of distinct v2a interneurons and motoneurons control the speed of locomotion. Neuron 83(4) 934-43
Song J, Ampatzis K, Björnfors ER, El Manira A. (2016) Motor neurons control locomotor circuit function retrogradely via gap junctions. Nature 529(7586) 399-402
Valdivia LE, Lamb DB, Horner W, Wierzbicki C, Tafessu A, Williams AM, Gestri G, Krasnow AM, Vleeshouwer-Neumann TS, Givens M, Young RM, Lawrence LM, Stickney HL, Hawkins TA, Schwarz QP, Cavodeassi F, Wilson SW, Cerveny KL. (2016) Antagonism between Gdf6a and retinoic acid pathways controls timing of retinal neurogenesis and growth of the eye in zebrafish. Development 143(7) 1087-98
Song J, Dahlberg E, El Manira A. (2018) V2a interneuron diversity tailors spinal circuit organization to control the vigor of locomotor movements. Nat Commun 9(1) 3370
Rulands S, Iglesias-Gonzalez AB, Boije H. (2018) Deterministic fate assignment of Müller glia cells in the zebrafish retina suggests a clonal backbone during development. Eur J Neurosci 48(12) 3597-3605
Almeida AD, Boije H, Chow RW, He J, Tham J, Suzuki SC, Harris WA. (2014) Spectrum of Fates: a new approach to the study of the developing zebrafish retina. Development 141(9) 1971-80
Weber IP, Ramos AP, Strzyz PJ, Leung LC, Young S, Norden C. (2014) Mitotic position and morphology of committed precursor cells in the zebrafish retina adapt to architectural changes upon tissue maturation. Cell Rep 7(2) 386-397
Sternberg JR, Severi KE, Fidelin K, Gomez J, Ihara H, Alcheikh Y, Hubbard JM, Kawakami K, Suster M, Wyart C. (2016) Optimization of a Neurotoxin to Investigate the Contribution of Excitatory Interneurons to Speed Modulation In Vivo. Curr Biol 26(17) 2319-28
Hilinski WC, Bostrom JR, England SJ, Juárez-Morales JL, de Jager S, Armant O, Legradi J, Strähle U, Link BA, Lewis KE. (2016) Lmx1b is required for the glutamatergic fates of a subset of spinal cord neurons. Neural Dev 11(1) 16
Pedroni A, Ampatzis K. (2019) Large-Scale Analysis of the Diversity and Complexity of the Adult Spinal Cord Neurotransmitter Typology. iScience 19 1189-1201
Menelaou E, McLean DL. (2019) Hierarchical control of locomotion by distinct types of spinal V2a interneurons in zebrafish. Nat Commun 10(1) 4197
Song J, Pallucchi I, Ausborn J, Ampatzis K, Bertuzzi M, Fontanel P, Picton LD, El Manira A. (2020) Multiple Rhythm-Generating Circuits Act in Tandem with Pacemaker Properties to Control the Start and Speed of Locomotion. Neuron 105(6) 1048-1061.e4
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Category: Transgenics
| Allele : |
nns3 |
| Information : |
Transgenic zebrafish that express DsRed-Express under the control of the alx promoter/enhancer.Method for Generation: BAC, ISceI |
| Publications : |
Kimura Y et al (2006) J. Neurosci. 26(21),5684-97 |
| Taxonomy : |
Siluriformes
|
| Reference : |
Knafo S, Fidelin K, Prendergast A, Tseng PB, Parrin A, Dickey C, Böhm UL, Figueiredo SN, Thouvenin O, Pascal-Moussellard H, Wyart C. (2017) Mechanosensory neurons control the timing of spinal microcircuit selection during locomotion. Elife 6
Sternberg JR, Severi KE, Fidelin K, Gomez J, Ihara H, Alcheikh Y, Hubbard JM, Kawakami K, Suster M, Wyart C. (2016) Optimization of a Neurotoxin to Investigate the Contribution of Excitatory Interneurons to Speed Modulation In Vivo. Curr Biol 26(17) 2319-28
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Category: Transgenics
Category: Transgenics
Category: Transgenics
| Allele : |
kj9 |
| Information : |
The reporter constructThe 5.5-kb region immediately upstream of the zebrafish SWS1 (UV-sensitive) opsin was cloned into pEGFP-1(Clontech) plasmid at EcoRI/SalI.PhenotypeGFP fluorescence is observable in the retina after ~55 hpf (hours post fertilization) under a fluorescent microscope. It takes about 4~5 dpf (days post fertilization) for the GFP signal to be strong enough to be easily detectable under a stereo fluorescence microscope.Examination of transgene by PCRGenomic DNA is extracted from a fin clip at 1~2 months old. A portion of pEGFP sequence is PCR-amplified by the following primer pair: 5'-tacggcgtgcagtgcttcag-3' and 5'-tgttgtagttgtactccagc-3'. |
| Publications : |
Takechi M et al (2003) FEBS Lett. 553(1-2),90-4 |
| Taxonomy : |
Siluriformes
|
| Reference : |
Crespo C, Knust E. (2018) Characterisation of maturation of photoreceptor cell subtypes during zebrafish retinal development. Biol Open 7(11)
D''Orazi FD, Zhao XF, Wong RO, Yoshimatsu T. (2016) Mismatch of Synaptic Patterns between Neurons Produced in Regeneration and during Development of the Vertebrate Retina. Curr Biol 26(17) 2268-79
Fang W, Guo C, Wei X. (2017) <i>Rainbow</i> Enhancers Regulate Restrictive Transcription in Teleost Green, Red, and Blue Cones. J Neurosci 37(11) 2834-2848
Nagashima M, Hadidjojo J, Barthel LK, Lubensky DK, Raymond PA. (2017) Anisotropic Müller glial scaffolding supports a multiplex lattice mosaic of photoreceptors in zebrafish retina. Neural Dev 12(1) 20
Niklaus S, Cadetti L, Vom Berg-Maurer CM, Lehnherr A, Hotz AL, Forster IC, Gesemann M, Neuhauss SCF. (2017) Shaping of Signal Transmission at the Photoreceptor Synapse by EAAT2 Glutamate Transporters. eNeuro 4(3)
Noel NCL, Allison WT. (2018) Connectivity of cone photoreceptor telodendria in the zebrafish retina. J Comp Neurol 526(4) 609-625
Sun C, Mitchell DM, Stenkamp DL. (2018) Isolation of photoreceptors from mature, developing, and regenerated zebrafish retinas, and of microglia/macrophages from regenerating zebrafish retinas. Exp Eye Res 177 130-144
Zimmermann MJY, Nevala NE, Yoshimatsu T, Osorio D, Nilsson DE, Berens P, Baden T. (2018) Zebrafish Differentially Process Color across Visual Space to Match Natural Scenes. Curr Biol 28(13) 2018-2032.e5
Li YN, Tsujimura T, Kawamura S, Dowling JE. (2012) Bipolar cell-photoreceptor connectivity in the zebrafish (Danio rerio) retina. J Comp Neurol 520(16) 3786-802
Novales Flamarique I. (2016) Diminished foraging performance of a mutant zebrafish with reduced population of ultraviolet cones. Proc Biol Sci 283(1826) 20160058
Yoshimatsu T, D''Orazi FD, Gamlin CR, Suzuki SC, Suli A, Kimelman D, Raible DW, Wong RO. (2016) Presynaptic partner selection during retinal circuit reassembly varies with timing of neuronal regeneration in vivo. Nat Commun 7 10590
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Category: Transgenics
Category: Transgenics
Category: Transgenics
| Allele : |
ha01 |
| Publications : |
Mizoguchi T et al (2008) Development 135(15),2521-9 |
| Taxonomy : |
Siluriformes
|
| Reference : |
Kondow A, Ohnuma K, Kamei Y, Taniguchi A, Bise R, Sato Y, Yamaguchi H, Nonaka S, Hashimoto K. (2020) Light-sheet microscopy-based 3D single-cell tracking reveals a correlation between cell cycle and the start of endoderm cell internalization in early zebrafish development. Dev Growth Differ 62(7-8) 495-502
Oralová V, Rosa JT, Larionova D, Witten PE, Huysseune A. (2020) Multiple epithelia are required to develop teeth deep inside the pharynx. Proc Natl Acad Sci U S A 117(21) 11503-11512
Cayuso J, Dzementsei A, Fischer JC, Karemore G, Caviglia S, Bartholdson J, Wright GJ, Ober EA. (2016) EphrinB1/EphB3b Coordinate Bidirectional Epithelial-Mesenchymal Interactions Controlling Liver Morphogenesis and Laterality. Dev Cell 39(3) 316-328
Hu B, Gao Y, Davies L, Woo S, Topczewski J, Jessen JR, Lin F. (2018) Glypican 4 and Mmp14 interact in regulating the migration of anterior endodermal cells by limiting extracellular matrix deposition. Development 145(17)
Juan T, Géminard C, Coutelis JB, Cerezo D, Polès S, Noselli S, Fürthauer M. (2018) Myosin1D is an evolutionarily conserved regulator of animal left-right asymmetry. Nat Commun 9(1) 1942
Kasahara K, Aoki H, Kiyono T, Wang S, Kagiwada H, Yuge M, Tanaka T, Nishimura Y, Mizoguchi A, Goshima N, Inagaki M. (2018) EGF receptor kinase suppresses ciliogenesis through activation of USP8 deubiquitinase. Nat Commun 9(1) 758
Gao Y, Hu B, Flores R, Xie H, Lin F. (2022) Fibronectin and Integrin α5 play overlapping and independent roles in regulating the development of pharyngeal endoderm and cartilage. Dev Biol 489 122-133
Balaraju AK, Hu B, Rodriguez JJ, Murry M, Lin F. (2021) Glypican 4 regulates planar cell polarity of endoderm cells by controlling the localization of Cadherin 2. Development 148(14)
Dzementsei A, Barooji YF, Ober EA, Oddershede LB. (2022) Foregut organ progenitors and their niche display distinct viscoelastic properties in vivo during early morphogenesis stages. Commun Biol 5(1) 402
Bloomekatz J, Singh R, Prall OW, Dunn AC, Vaughan M, Loo CS, Harvey RP, Yelon D. (2017) Platelet-derived growth factor (PDGF) signaling directs cardiomyocyte movement toward the midline during heart tube assembly. Elife 6
Miles LB, Mizoguchi T, Kikuchi Y, Verkade H. (2017) A role for planar cell polarity during early endoderm morphogenesis. Biol Open 6(5) 531-539
Nelson AC, Cutty SJ, Gasiunas SN, Deplae I, Stemple DL, Wardle FC. (2017) In Vivo Regulation of the Zebrafish Endoderm Progenitor Niche by T-Box Transcription Factors. Cell Rep 19(13) 2782-2795
Norris ML, Pauli A, Gagnon JA, Lord ND, Rogers KW, Mosimann C, Zon LI, Schier AF. (2017) Toddler signaling regulates mesodermal cell migration downstream of Nodal signaling. Elife 6
Malhotra D, Shin J, Solnica-Krezel L, Raz E. (2018) Spatio-temporal regulation of concurrent developmental processes by generic signaling downstream of chemokine receptors. Elife 7
Oralová V, Rosa JT, Soenens M, Bek JW, Willaert A, Witten PE, Huysseune A. (2019) Beyond the whole-mount phenotype: high-resolution imaging in fluorescence-based applications on zebrafish. Biol Open 8(5)
Teixeira Rosa J, Oralová V, Larionova D, Eisenhoffer GT, Eckhard Witten P, Huysseune A. (2019) Periderm invasion contributes to epithelial formation in the teleost pharynx. Sci Rep 9(1) 10082
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Category: Transgenics
| Information : |
Method for Generation: plasmid, ISceI |
| Publications : |
Kimura Y et al (2008) Development 135(18),3001-5, Hamaoka T et al (2002) Genesis 34(3),215-20 |
| Taxonomy : |
Siluriformes
|
| Reference : |
Lovett-Barron M, Chen R, Bradbury S, Andalman AS, Wagle M, Guo S, Deisseroth K. (2020) Multiple convergent hypothalamus-brainstem circuits drive defensive behavior. Nat Neurosci 23(8) 959-967
Iwasaki M, Yokoi H, Suzuki T, Kawakami K, Wada H. (2020) Development of the anterior lateral line system through local tissue-tissue interactions in the zebrafish head. Dev Dyn 249(12) 1440-1454
Jeong YM, Jin TE, Choi JH, Lee MS, Kim HT, Hwang KS, Park DS, Oh HW, Choi JK, Korzh V, Schachner M, You KH, Kim CH. (2014) Induction of clusterin expression by neuronal cell death in Zebrafish. J Genet Genomics 41(11) 583-9
Kim CK, Miri A, Leung LC, Berndt A, Mourrain P, Tank DW, Burdine RD. (2014) Prolonged, brain-wide expression of nuclear-localized GCaMP3 for functional circuit mapping. Front Neural Circuits 8 138
Okumura K, Kakinuma H, Amo R, Okamoto H, Yamasu K, Tsuda S. (2018) Optical measurement of neuronal activity in the developing cerebellum of zebrafish using voltage-sensitive dye imaging. Neuroreport 29(16) 1349-1354
Matsuda K, Yoshida M, Kawakami K, Hibi M, Shimizu T. (2017) Granule cells control recovery from classical conditioned fear responses in the zebrafish cerebellum. Sci Rep 7(1) 11865
Taniguchi A, Kimura Y, Mori I, Nonaka S, Higashijima SI. (2017) Axially-confined in vivo single-cell labeling by primed conversion using blue and red lasers with conventional confocal microscopes. Dev Growth Differ 59(9) 741-748
Gupta T, Marquart GD, Horstick EJ, Tabor KM, Pajevic S, Burgess HA. (2018) Morphometric analysis and neuroanatomical mapping of the zebrafish brain. Methods 150 49-62
Kim S, Chung AY, Na JE, Lee SJ, Jeong SH, Kim E, Sun W, Rhyu IJ, Park HC. (2019) Myelin degeneration induced by mutant superoxide dismutase 1 accumulation promotes amyotrophic lateral sclerosis. Glia 67(10) 1910-1921
Jeong YM, Choi TI, Hwang KS, Lee JS, Gerlai R, Kim CH. (2021) Optogenetic Manipulation of Olfactory Responses in Transgenic Zebrafish: A Neurobiological and Behavioral Study. Int J Mol Sci 22(13)
Kyung T, Lee S, Kim JE, Cho T, Park H, Jeong YM, Kim D, Shin A, Kim S, Baek J, Kim J, Kim NY, Woo D, Chae S, Kim CH, Shin HS, Han YM, Kim D, Heo WD. (2015) Optogenetic control of endogenous Ca(2+) channels in vivo. Nat Biotechnol 33(10) 1092-6
Friedmann D, Hoagland A, Berlin S, Isacoff EY. (2015) A spinal opsin controls early neural activity and drives a behavioral light response. Curr Biol 25(1) 69-74
Kamezaki A, Sato F, Aoki K, Asakawa K, Kawakami K, Matsuzaki F, Sehara-Fujisawa A. (2016) Visualization of Neuregulin 1 ectodomain shedding reveals its local processing in vitro and in vivo. Sci Rep 6 28873
Barykina NV, Subach OM, Piatkevich KD, Jung EE, Malyshev AY, Smirnov IV, Bogorodskiy AO, Borshchevskiy VI, Varizhuk AM, Pozmogova GE, Boyden ES, Anokhin KV, Enikolopov GN, Subach FV. (2017) Green fluorescent genetically encoded calcium indicator based on calmodulin/M13-peptide from fungi. PLoS One 12(8) e0183757
Boulanger-Weill J, Candat V, Jouary A, Romano SA, Pérez-Schuster V, Sumbre G. (2017) Functional Interactions between Newborn and Mature Neurons Leading to Integration into Established Neuronal Circuits. Curr Biol 27(12) 1707-1720.e5
Miyazawa H, Okumura K, Hiyoshi K, Maruyama K, Kakinuma H, Amo R, Okamoto H, Yamasu K, Tsuda S. (2018) Optical interrogation of neuronal circuitry in zebrafish using genetically encoded voltage indicators. Sci Rep 8(1) 6048
Tabor KM, Smith TS, Brown M, Bergeron SA, Briggman KL, Burgess HA. (2018) Presynaptic Inhibition Selectively Gates Auditory Transmission to the Brainstem Startle Circuit. Curr Biol 28(16) 2527-2535.e8
Bekri A, Drapeau P. (2018) Glycine Promotes the Survival of a Subpopulation of Neural Stem Cells. Front Cell Dev Biol 6 68
Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, Yoon YG, Freifeld L, Saulnier JL, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens MB, Flavell SW, Sabatini BL, Boyden ES. (2018) A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nat Chem Biol 14(4) 352-360
Shen Y, Dana H, Abdelfattah AS, Patel R, Shea J, Molina RS, Rawal B, Rancic V, Chang YF, Wu L, Chen Y, Qian Y, Wiens MD, Hambleton N, Ballanyi K, Hughes TE, Drobizhev M, Kim DS, Koyama M, Schreiter ER, Campbell RE. (2018) A genetically encoded Ca
Hernandez O, Papagiakoumou E, Tanese D, Fidelin K, Wyart C, Emiliani V. (2016) Three-dimensional spatiotemporal focusing of holographic patterns. Nat Commun 7 11928
Filosa A, Barker AJ, Dal Maschio M, Baier H. (2016) Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum. Neuron 90(3) 596-608
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Category: Transgenics
| Information : |
Method for Generation: BAC |
| Publications : |
Kimura Y et al (2008) Development 135(18),3001-5 |
| Taxonomy : |
Siluriformes
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| Reference : |
Icha J, Kunath C, Rocha-Martins M, Norden C. (2016) Independent modes of ganglion cell translocation ensure correct lamination of the zebrafish retina. J Cell Biol 215(2) 259-275
Amini R, Bhatnagar A, Schlüßler R, Möllmert S, Guck J, Norden C. (2022) Amoeboid-like migration ensures correct horizontal cell layer formation in the developing vertebrate retina. Elife 11
Vitorino M, Jusuf PR, Maurus D, Kimura Y, Higashijima S, Harris WA. (2009) Vsx2 in the zebrafish retina: restricted lineages through derepression. Neural Dev 4 14
Jusuf PR, Almeida AD, Randlett O, Joubin K, Poggi L, Harris WA. (2011) Origin and determination of inhibitory cell lineages in the vertebrate retina. J Neurosci 31(7) 2549-62
Heermann S, Schütz L, Lemke S, Krieglstein K, Wittbrodt J. (2015) Eye morphogenesis driven by epithelial flow into the optic cup facilitated by modulation of bone morphogenetic protein. Elife 4
Akanuma T, Chen C, Sato T, Merks RM, Sato TN. (2016) Memory of cell shape biases stochastic fate decision-making despite mitotic rounding. Nat Commun 7 11963
Kozawa S, Akanuma T, Sato T, Sato YD, Ikeda K, Sato TN. (2016) Real-time prediction of cell division timing in developing zebrafish embryo. Sci Rep 6 32962
Kei JN, Dudczig S, Currie PD, Jusuf PR. (2016) Feedback from each retinal neuron population drives expression of subsequent fate determinant genes without influencing the cell cycle exit timing. J Comp Neurol 524(13) 2553-66
McIntosh R, Norris J, Clarke JD, Alexandre P. (2017) Spatial distribution and characterization of non-apical progenitors in the zebrafish embryo central nervous system. Open Biol 7(2)
Engerer P, Suzuki SC, Yoshimatsu T, Chapouton P, Obeng N, Odermatt B, Williams PR, Misgeld T, Godinho L. (2017) Uncoupling of neurogenesis and differentiation during retinal development. EMBO J 36(9) 1134-1146
Goldshmit Y, Tang JKKY, Siegel AL, Nguyen PD, Kaslin J, Currie PD, Jusuf PR. (2018) Different Fgfs have distinct roles in regulating neurogenesis after spinal cord injury in zebrafish. Neural Dev 13(1) 24
Kimura Y, Satou C, Higashijima S. (2008) V2a and V2b neurons are generated by the final divisions of pair-producing progenitors in the zebrafish spinal cord. Development 135(18) 3001-5
Ng Chi Kei J, Currie PD, Jusuf PR. (2017) Fate bias during neural regeneration adjusts dynamically without recapitulating developmental fate progression. Neural Dev 12(1) 12
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Category: Transgenics
| Allele : |
kj11 / tkk008 |
| Information : |
Zebrafish have one type of rod and four types of cone photoreceptor cells in the retina. The four cone types express phylogenetically and spectrally distinct types of visual opsins. Using zebrafish as a model animal, we are exploring the molecular mechanism of the cell-type specific expression of the opsin genes. We make DNA constructs where test genomic regions in or around the opsin genes are conjugated to the GFP (Green Fluorescent Protein)-related reporter genes and introduce them to zebrafish embryos to establish transgenic lines. The Tg(zfSWS2-3.5A:EGFP)tkk008 is one of such transgenic zebrafish lines, where the 3.5-kb region immediately upstream of the SWS2 opsin (blue type opsin) gene is introduced with the EGFP reporter. It expresses GFP specifically in the long single cones (LSCs) of the retina. In effect, LSCs of the zebrafish are visualized by GFP. The fish would be useful for the studies of retinal development and screening of retinal mutants. |
| Publications : |
Takechi M et al (2008) J. Biol. Chem. 283(46),31625-32 |
| Taxonomy : |
Siluriformes
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| Reference : |
D''Orazi FD, Zhao XF, Wong RO, Yoshimatsu T. (2016) Mismatch of Synaptic Patterns between Neurons Produced in Regeneration and during Development of the Vertebrate Retina. Curr Biol 26(17) 2268-79
Niklaus S, Cadetti L, Vom Berg-Maurer CM, Lehnherr A, Hotz AL, Forster IC, Gesemann M, Neuhauss SCF. (2017) Shaping of Signal Transmission at the Photoreceptor Synapse by EAAT2 Glutamate Transporters. eNeuro 4(3)
Li YN, Tsujimura T, Kawamura S, Dowling JE. (2012) Bipolar cell-photoreceptor connectivity in the zebrafish (Danio rerio) retina. J Comp Neurol 520(16) 3786-802
Yoshimatsu T, D''Orazi FD, Gamlin CR, Suzuki SC, Suli A, Kimelman D, Raible DW, Wong RO. (2016) Presynaptic partner selection during retinal circuit reassembly varies with timing of neuronal regeneration in vivo. Nat Commun 7 10590
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Category: Transgenics
Category: Transgenics
| Information : |
Phenotype: An enhancer trap transgenic zebrafish that express GFP in the Mauthner cells and a small number of spinal neurons.Features:In the hindbrain, GFP is express in a pair of the Mauthner cells (Fig. 1A). In the spinal cord, GFP is expressed in CoLo neurons (arrows) and KA neurons (arrowheads) (Fig. 1B). The strain is useful for investigating morphology of these neurons. |
| Publications : |
Satou C et al (2009) J. Neurosci. 29(21),6780-93 |
| Taxonomy : |
Siluriformes
|
| Reference : |
Pallucchi I, Bertuzzi M, Michel JC, Miller AC, El Manira A. (2022) Transformation of an early-established motor circuit during maturation in zebrafish. Cell Rep 39(2) 110654
Yang LQ, Chen M, Ren DL, Hu B. (2020) Dual Oxidase Mutant Retards Mauthner-Cell Axon Regeneration at an Early Stage via Modulating Mitochondrial Dynamics in Zebrafish. Neurosci Bull 36(12) 1500-1512
Chen X, Yin W, Chen S, Zhang W, Li H, Kuang H, Zhou M, Teng Y, Zhang J, Shen G, Liang D, Li Z, Hu B, Wu L. (2021) Loss of PIGK function causes severe infantile encephalopathy and extensive neuronal apoptosis. Hum Genet 140(5) 791-803
Hecker A, Anger P, Braaker PN, Schulze W, Schuster S. (2020) High-resolution mapping of injury-site dependent functional recovery in a single axon in zebrafish. Commun Biol 3(1) 307
Hecker A, Schulze W, Oster J, Richter DO, Schuster S. (2020) Removing a single neuron in a vertebrate brain forever abolishes an essential behavior. Proc Natl Acad Sci U S A 117(6) 3254-3260
Meserve JH, Nelson JC, Marsden KC, Hsu J, Echeverry FA, Jain RA, Wolman MA, Pereda AE, Granato M. (2021) A forward genetic screen identifies Dolk as a regulator of startle magnitude through the potassium channel subunit Kv1.1. PLoS Genet 17(6) e1008943
Yao C, Vanderpool KG, Delfiner M, Eddy V, Lucaci AG, Soto-Riveros C, Yasumura T, Rash JE, Pereda AE. (2014) Electrical synaptic transmission in developing zebrafish: properties and molecular composition of gap junctions at a central auditory synapse. J Neurophysiol 112(9) 2102-13
Lasseigne AM, Echeverry FA, Ijaz S, Michel JC, Martin EA, Marsh AJ, Trujillo E, Marsden KC, Pereda AE, Miller AC. (2021) Electrical synaptic transmission requires a postsynaptic scaffolding protein. Elife 10
Wu MY, Carbo-Tano M, Mirat O, Lejeune FX, Roussel J, Quan FB, Fidelin K, Wyart C. (2021) Spinal sensory neurons project onto the hindbrain to stabilize posture and enhance locomotor speed. Curr Biol 31(15) 3315-3329.e5
Xu L, Guan NN, Huang CX, Hua Y, Song J. (2021) A neuronal circuit that generates the temporal motor sequence for the defensive response in zebrafish larvae. Curr Biol 31(15) 3343-3357.e4
Guan NN, Xu L, Zhang T, Huang CX, Wang Z, Dahlberg E, Wang H, Wang F, Pallucchi I, Hua Y, El Manira A, Song J. (2021) A specialized spinal circuit for command amplification and directionality during escape behavior. Proc Natl Acad Sci U S A 118(42)
Chen M, Huang RC, Yang LQ, Ren DL, Hu B. (2019) <i>In vivo</i> imaging of evoked calcium responses indicates the intrinsic axonal regenerative capacity of zebrafish. FASEB J 33(6) 7721-7733
Fabio A. Echeverry, Sundas Ijaz, Alberto E. Pereda (2022) Recording Synaptic Transmission from Auditory Mixed Synapses on the Mauthner Cells of Developing Zebrafish eneuro 9 ENEURO.0021-22.2022
Da-Long Ren, Bing Hu, Guo-Jian Shao, Xin-Liang Wang, Mei-Li Wei (2023) DUSP2 deletion with CRISPR/Cas9 promotes Mauthner cell axonal regeneration at the early stage of zebrafish Neural Regeneration Research 18 577
Wang Z, Wang X, Shi L, Cai Y, Hu B. (2022) Wolfram syndrome 1b mutation suppresses Mauthner-cell axon regeneration via ER stress signal pathway. Acta Neuropathol Commun 10(1) 184
Michel JC, Lasseigne AM, Marsh AJ, Miller AC. (2022) The <i>disconnect2</i> mutation disrupts the <i>tjp1b</i> gene that is required for electrical synapse formation. MicroPubl Biol 2022
Schirmer E, Ritschar S, Ochs M, Laforsch C, Schuster S, Römpp A. (2022) MALDI mass spectrometry imaging workflow for the aquatic model organisms Danio rerio and Daphnia magna. Sci Rep 12(1) 7288
Hubbard JM, Böhm UL, Prendergast A, Tseng PB, Newman M, Stokes C, Wyart C. (2016) Intraspinal Sensory Neurons Provide Powerful Inhibition to Motor Circuits Ensuring Postural Control during Locomotion. Curr Biol 26(21) 2841-2853
Liu YC, Hale ME. (2017) Local Spinal Cord Circuits and Bilateral Mauthner Cell Activity Function Together to Drive Alternative Startle Behaviors. Curr Biol 27(5) 697-704
Hu BB, Chen M, Huang RC, Huang YB, Xu Y, Yin W, Li L, Hu B. (2018) In vivo imaging of Mauthner axon regeneration, remyelination and synapses re-establishment after laser axotomy in zebrafish larvae. Exp Neurol 300 67-73
Satou C, Kimura Y, Kohashi T, Horikawa K, Takeda H, Oda Y, Higashijima S. (2009) Functional role of a specialized class of spinal commissural inhibitory neurons during fast escapes in zebrafish. J Neurosci 29(21) 6780-93
Xu Y, Chen M, Hu B, Huang R, Hu B. (2017) <i>In vivo</i> Imaging of Mitochondrial Transport in Single-Axon Regeneration of Zebrafish Mauthner Cells. Front Cell Neurosci 11 4
Miller AC, Whitebirch AC, Shah AN, Marsden KC, Granato M, O''Brien J, Moens CB. (2017) A genetic basis for molecular asymmetry at vertebrate electrical synapses. Elife 6
Watanabe T, Shimazaki T, Oda Y. (2017) Coordinated Expression of Two Types of Low-Threshold K
Shimazaki T, Tanimoto M, Oda Y, Higashijima SI. (2019) Behavioral Role of the Reciprocal Inhibition between a Pair of Mauthner Cells during Fast Escapes in Zebrafish. J Neurosci 39(7) 1182-1194
Marsden KC, Jain RA, Wolman MA, Echeverry FA, Nelson JC, Hayer KE, Miltenberg B, Pereda AE, Granato M. (2018) A Cyfip2-Dependent Excitatory Interneuron Pathway Establishes the Innate Startle Threshold. Cell Rep 23(3) 878-887
Fan Y, Yin W, Hu B, Kline AD, Zhang VW, Liang D, Sun Y, Wang L, Tang S, Powis Z, Li L, Yan H, Shi Z, Yang X, Chen Y, Wang J, Jiang Y, Tan H, Gu X, Wu L, Yu Y. (2018) De Novo Mutations of CCNK Cause a Syndromic Neurodevelopmental Disorder with Distinctive Facial Dysmorphism. Am J Hum Genet 103(3) 448-455
Yang LQ, Chen M, Zhang JL, Ren DL, Hu B. (2018) Hypoxia Delays Oligodendrocyte Progenitor Cell Migration and Myelin Formation by Suppressing Bmp2b Signaling in Larval Zebrafish. Front Cell Neurosci 12 348
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