 Tabs(ALL, DNA, BLAST, GO, Taxonomy, DO, Reference) are clickable.
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Reference Related Resource Count: 23,108
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Associated Resources List
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Arabidopsis / Cultured plant cells, genes:
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rpc00012
more
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 Available
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Riken BRC
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Category: plant cell line
| Resource Name : |
Sly-1 |
| Species : |
Solanum lycopersicum |
| Depositor / Developer : |
GOTO, Nobuharu |
| Taxonomy : |
Solanum lycopersicum
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| Reference : |
Marutani M, Taguchi F, Shimizu R, Inagaki Y, Toyoda K, Shiraishi T, Ichinose Y. (2005) Flagellin from Pseudomonas syringae pv. tabaci induced hrp-independent HR in tomato. J Gen Plant Pathol. 71(4) 289-295.
Miyashita M, Oda M, Ono Y, Komoda E, Miyagawa H. (2011) Discovery of a small peptide from combinatorial libraries that can activate the plant immune system by a jasmonic acid signaling pathway. Chembiochem 12(9) 1323-9
Taguchi F, Shimizu R, Inagaki Y, Toyoda K, Shiraishi T, Ichinose Y. (2003) Post-translational modification of flagellin determines the specificity of HR induction. Plant Cell Physiol 44(3) 342-9
Shimizu R, Taguchi F, Marutani M, Mukaihara T, Inagaki Y, Toyoda K, Shiraishi T, Ichinose Y. (2003) The DeltafliD mutant of Pseudomonas syringae pv. tabaci, which secretes flagellin monomers, induces a strong hypersensitive reaction (HR) in non-host tomato cells. Mol Genet Genomics 269(1) 21-30
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Arabidopsis / Cultured plant cells, genes:
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rpc00014
more
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Available
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Riken BRC
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Category: plant cell line
| Resource Name : |
CRA |
| Species : |
Catharanthus roseus |
| Depositor / Developer : |
GOTO, Nobuharu |
| Taxonomy : |
Catharanthus roseus
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| Reference : |
Sakakibara H, Kasahara H, Ueda N, Kojima M, Takei K, Hishiyama S, Asami T, Okada K, Kamiya Y, Yamaya T, Yamaguchi S. (2005) Agrobacterium tumefaciens increases cytokinin production in plastids by modifying the biosynthetic pathway in the host plant. Proc Natl Acad Sci U S A 102(28) 9972-7
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Arabidopsis / Cultured plant cells, genes:
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rpc00015
more
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Available
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Riken BRC
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Category: plant cell line
| Resource Name : |
V208 |
| Species : |
Catharanthus roseus |
| Depositor / Developer : |
GOTO, Nobuharu |
| Taxonomy : |
Catharanthus roseus
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| Reference : |
Sakakibara H, Kasahara H, Ueda N, Kojima M, Takei K, Hishiyama S, Asami T, Okada K, Kamiya Y, Yamaya T, Yamaguchi S. (2005) Agrobacterium tumefaciens increases cytokinin production in plastids by modifying the biosynthetic pathway in the host plant. Proc Natl Acad Sci U S A 102(28) 9972-7
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Arabidopsis / Cultured plant cells, genes:
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rpc00024
more
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Available
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Riken BRC
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Category: plant cell line
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Arabidopsis / Cultured plant cells, genes:
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rpc00001
more
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Available
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Riken BRC
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Category: plant cell line
| Resource Name : |
BY-2 |
| Species : |
Nicotiana tabacum |
| Depositor / Developer : |
A. R. Kranz |
| Taxonomy : |
Nicotiana tabacum
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| Reference : |
Hayashi K, Nakamura S, Fukunaga S, Nishimura T, Jenness MK, Murphy AS, Motose H, Nozaki H, Furutani M, Aoyama T. (2014) Auxin transport sites are visualized in planta using fluorescent auxin analogs. Proc Natl Acad Sci U S A 111(31) 11557-62
Keiko Midorikawa, Kousuke Tsuchiya, Simon Sau Yin Law, Yu Miyagi, Takuya Asai, Takanori Iino, Yasuyuki Ozeki, Yutaka Kodama, Keiji Numata (2020) Cellular internalization mechanism of novel Raman probes designed for plant cells RSC Chemical Biology 1 204-208
Goto-Yamada S, Oikawa K, Bizan J, Shigenobu S, Yamaguchi K, Mano S, Hayashi M, Ueda H, Hara-Nishimura I, Nishimura M, Yamada K. (2019) Sucrose Starvation Induces Microautophagy in Plant Root Cells. Front Plant Sci 10 1604
Yoneda A, Ohtani M, Katagiri D, Hosokawa Y, Demura T. (2020) Hechtian Strands Transmit Cell Wall Integrity Signals in Plant Cells. Plants (Basel) 9(5)
Tanaka Y, Nanasato Y, Omura K, Endoh K, Kawano T, Iwasaki T. (2021) Direct protein delivery into intact plant cells using polyhistidine peptides. Biosci Biotechnol Biochem 85(6) 1405-1414
Toshihiro Kobayashi, Takao Niino, Masatomo Kobayashi (2006) Cryopreservation of tobacco BY-2 suspension cell cultures by vitrification with encapsulation Plant Biotechnology 23 333-337
Kurokawa M, Nakano M, Kitahata N, Kuchitsu K, Furuya T. (2021) An efficient direct screening system for microorganisms that activate plant immune responses based on plant-microbe interactions using cultured plant cells. Sci Rep 11(1) 7396
Imamura T, Isozumi N, Higashimura Y, Ohki S, Mori M. (2021) Production of ORF8 protein from SARS-CoV-2 using an inducible virus-mediated expression system in suspension-cultured tobacco BY-2 cells. Plant Cell Rep 40(3) 433-436
Iwakawa HO, Lam AYW, Mine A, Fujita T, Kiyokawa K, Yoshikawa M, Takeda A, Iwasaki S, Tomari Y. (2021) Ribosome stalling caused by the Argonaute-microRNA-SGS3 complex regulates the production of secondary siRNAs in plants. Cell Rep 35(13) 109300
Ohki S, Imamura T, Higashimura Y, Matsumoto K, Mori M. (2021) Similarities and differences in the conformational stability and reversibility of ORF8, an accessory protein of SARS-CoV-2, and its L84S variant. Biochem Biophys Res Commun 563 92-97
Takahiro Kato, Futoshi Taura, Jung-Bum Lee, Fumiya Kurosaki (2018) High Level Production of δ-Guaiene, a Bicyclic Sesquiterpene Accumulated in Agarwood, by Co-expression of δ-Guaiene Synthase and Farnesyl Diphosphate Synthase Genes in Tobacco BY-2 Cells Natural Product Communications 13 1934578X1801300
Tabata R, Sumida K, Yoshii T, Ohyama K, Shinohara H, Matsubayashi Y. (2014) Perception of root-derived peptides by shoot LRR-RKs mediates systemic N-demand signaling. Science 346(6207) 343-6
Sakurai Y, Baeg K, Lam AYW, Shoji K, Tomari Y, Iwakawa HO. (2021) Cell-free reconstitution reveals the molecular mechanisms for the initiation of secondary siRNA biogenesis in plants. Proc Natl Acad Sci U S A 118(31)
Miyamoto T, Toyooka K, Chuah JA, Odahara M, Higchi-Takeuchi M, Goto Y, Motoda Y, Kigawa T, Kodama Y, Numata K. (2022) A Synthetic Multidomain Peptide That Drives a Macropinocytosis-Like Mechanism for Cytosolic Transport of Exogenous Proteins into Plants. JACS Au 2(1) 223-233
Murakami T, Katsuragi Y, Hirai H, Wataya K, Kondo M, Che FS. (2022) Distribution of flagellin CD2-1, flg22, and flgII-28 recognition systems in plant species and regulation of plant immune responses through these recognition systems. Biosci Biotechnol Biochem 86(4) 490-501
Zhang R, Isozumi N, Mori M, Okuta R, Singkaravanit-Ogawa S, Imamura T, Kurita JI, Gan P, Shirasu K, Ohki S, Takano Y. (2021) Fungal effector SIB1 of Colletotrichum orbiculare has unique structural features and can suppress plant immunity in Nicotiana benthamiana. J Biol Chem 297(6) 101370
Junichirou Ohzeki, Kazuto Kugou, Koichiro Otake, Koei Okazaki, Seiji Takahashi, Daisuke Shibata, Hiroshi Masumoto (2022) Introduction of a long synthetic repetitive DNA sequence into cultured tobacco cells Plant Biotechnology
Mine A, Hyodo K, Tajima Y, Kusumanegara K, Taniguchi T, Kaido M, Mise K, Taniguchi H, Okuno T. (2012) Differential roles of Hsp70 and Hsp90 in the assembly of the replicase complex of a positive-strand RNA plant virus. J Virol 86(22) 12091-104
Nakanishi-Masuno T, Shitan N, Sugiyama A, Takanashi K, Inaba S, Kaneko S, Yazaki K. (2018) The Crotalaria juncea metal transporter CjNRAMP1 has a high Fe uptake activity, even in an environment with high Cd contamination. Int J Phytoremediation 20(14) 1427-1437
Sakurai N, Yamazaki S, Suda K, Hosoki A, Akimoto N, Takahashi H, Shibata D, Aoki Y. (2022) The Thing Metabolome Repository family (XMRs): comparable untargeted metabolome databases for analyzing sample-specific unknown metabolites. Nucleic Acids Res
Trolet A, Baldrich P, Criqui MC, Dubois M, Clavel M, Meyers BC, Genschik P. (2019) Cell Cycle-Dependent Regulation and Function of ARGONAUTE1 in Plants. Plant Cell 31(8) 1734-1750
Morimoto S, Tanaka Y, Sasaki K, Tanaka H, Fukamizu T, Shoyama Y, Shoyama Y, Taura F. (2007) Identification and characterization of cannabinoids that induce cell death through mitochondrial permeability transition in Cannabis leaf cells. J Biol Chem 282(28) 20739-51
Ogawa Y, Sakurai N, Oikawa A, Kai K, Morishita Y, Mori K, Moriya K, Fujii F, Aoki K, Suzuki H, Ohta D, Saito K, Shibata D. (2012) High-throughput cryopreservation of plant cell cultures for functional genomics. Plant Cell Physiol 53(5) 943-52
Kusube M, Nishino T, Nishikawa Y, Goto M, Matsuki H, Iwahashi H. (2010) Recovery of tobacco BY-2 cells after high hydrostatic pressure treatment. Ann N Y Acad Sci 1189 139-42
Weerawanich K, Webster G, Ma JK, Phoolcharoen W, Sirikantaramas S. (2018) Gene expression analysis, subcellular localization, and in planta antimicrobial activity of rice (Oryza sativa L.) defensin 7 and 8. Plant Physiol Biochem 124 160-166
Mori T, Saruta Y, Fukuda T, Prak K, Ishimoto M, Maruyama N, Utsumi S. (2009) Vacuolar sorting behaviors of 11S globulins in plant cells. Biosci Biotechnol Biochem 73(1) 53-60
Iwakawa HO, Tajima Y, Taniguchi T, Kaido M, Mise K, Tomari Y, Taniguchi H, Okuno T. (2012) Poly(A)-binding protein facilitates translation of an uncapped/nonpolyadenylated viral RNA by binding to the 3'' untranslated region. J Virol 86(15) 7836-49
Hyodo K, Mine A, Taniguchi T, Kaido M, Mise K, Taniguchi H, Okuno T. (2013) ADP ribosylation factor 1 plays an essential role in the replication of a plant RNA virus. J Virol 87(1) 163-76
Cho HJ, Moy Y, Rudnick NA, Klein TM, Yin J, Bolar J, Hendrick C, Beatty M, Castañeda L, Kinney AJ, Jones TJ, Chilcoat ND. (2022) Development of an efficient marker-free soybean transformation method using the novel bacterium Ochrobactrum haywardense H1. Plant Biotechnol J 20(5) 977-990
Tatsumi K, Ichino T, Isaka N, Sugiyama A, Moriyoshi E, Okazaki Y, Higashi Y, Kajikawa M, Tsuji Y, Fukuzawa H, Toyooka K, Sato M, Ichi I, Shimomura K, Ohta H, Saito K, Yazaki K. (2023) Excretion of triacylglycerol as a matrix lipid facilitating apoplastic accumulation of a lipophilic metabolite shikonin. J Exp Bot 74(1) 104-117
Otake K, Kugou K, Robertlee J, Ohzeki JI, Okazaki K, Hanano S, Takahashi S, Shibata D, Masumoto H. (2023) De novo induction of a DNA-histone H3K9 methylation loop on synthetic human repetitive DNA in cultured tobacco cells. Plant J
Tsuchiya K, Yilmaz N, Miyamoto T, Masunaga H, Numata K. (2020) Zwitterionic Polypeptides: Chemoenzymatic Synthesis and Loosening Function for Cellulose Crystals. Biomacromolecules 21(5) 1785-1794
Liu W, Shoji K, Naganuma M, Tomari Y, Iwakawa HO. (2022) The mechanisms of siRNA selection by plant Argonaute proteins triggering DNA methylation. Nucleic Acids Res 50(22) 12997-13010
Yuichi Furuhata, Emiko Egi, Tomi Murakami, Yoshio Kato (2023) A Method for Electroporation of Cre Recombinase Protein into Intact Nicotiana tabacum Cells Plants 12 1631
Simon Sau Yin Law, Masato Asanuma, Jingwen Shou, Yasuyuki Ozeki, Yutaka Kodama, Keiji Numata (2023) Deuterium- and Alkyne-Based Bioorthogonal Raman Probes for In Situ Quantitative Metabolic Imaging of Lipids within Plants JACS Au
Zhang L, Smertenko T, Fahy D, Koteyeva N, Moroz N, Kuchařová A, Novák D, Manoilov E, Smertenko P, Galva C, Šamaj J, Kostyukova AS, Sedbrook JC, Smertenko A. (2021) Analysis of formin functions during cytokinesis using specific inhibitor SMIFH2. Plant Physiol 186(2) 945-963
Thagun C, Suzuki T, Kodama Y, Numata K. (2023) C-Terminal Domain Controls Protein Quality and Secretion of Spider Silk in Tobacco Cells. Adv Biol (Weinh) e2300011
Hasegawa J, Sakamoto T, Fujimoto S, Yamashita T, Suzuki T, Matsunaga S. (2018) Auxin decreases chromatin accessibility through the TIR1/AFBs auxin signaling pathway in proliferative cells. Sci Rep 8(1) 7773
Katoh H, Fujita K, Takuhara Y, Ogawa A, Suzuki S. (2011) ER stress-induced protein, VIGG, disturbs plant cation homeostasis, which is correlated with growth retardation and robustness to ER stress. Biochem Biophys Res Commun 405(3) 514-20
Fukuda R, Tani M, Shibukawa S, Nobeyama T, Nomura T, Kato Y, Murakami T. (2023) Effects of lipoprotein nanoparticles'' composition and size on their internalization in plant and mammalian cells. Genes Cells 28(12) 881-892
Poborilova Z, Plchova H, Cerovska N, Gunter CJ, Hitzeroth II, Rybicki EP, Moravec T. (2020) Transient protein expression in tobacco BY-2 plant cell packs using single and multi-cassette replicating vectors. Plant Cell Rep 39(9) 1115-1127
Hann EC, Harland-Dunaway M, Garcia AJ, Meuser JE, Jinkerson RE. (2023) Alternative carbon sources for the production of plant cellular agriculture: a case study on acetate. Front Plant Sci 14 1104751
Sirikantaramas S, Taura F, Tanaka Y, Ishikawa Y, Morimoto S, Shoyama Y. (2005) Tetrahydrocannabinolic acid synthase, the enzyme controlling marijuana psychoactivity, is secreted into the storage cavity of the glandular trichomes. Plant Cell Physiol 46(9) 1578-82
Matsui A, Yin Y, Yamanaka K, Iwasaki M, Ashihara H. (2007) Metabolic fate of nicotinamide in higher plants. Physiol Plant 131(2) 191-200
Tateishi A, Kamiyoshihara Y, Matsuno J, Miyohashi F, Shiba H, Kanayama Y, Watanabe K, Nomura K, Inoue H. (2014) Heterologous expression of tomato glycoside hydrolase family 3 α-L-arabinofuranosidase/β-xylosidases in tobacco suspension cultured cells and synergic action of a family 51 isozyme under antisense suppression of the enzyme. Physiol Plant 150(2) 238-51
Yamada K, Osakabe Y, Mizoi J, Nakashima K, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K. (2010) Functional analysis of an Arabidopsis thaliana abiotic stress-inducible facilitated diffusion transporter for monosaccharides. J Biol Chem 285(2) 1138-46
Kimura S, Kawano T, Iwasaki T. (2017) Short polyhistidine peptides penetrate effectively into Nicotiana tabacum-cultured cells and Saccharomyces cerevisiae cells. Biosci Biotechnol Biochem 81(1) 112-118
Iijima M, Munakata R, Takahashi H, Kenmoku H, Nakagawa R, Kodama T, Asakawa Y, Abe I, Yazaki K, Kurosaki F, Taura F. (2017) Identification and Characterization of Daurichromenic Acid Synthase Active in Anti-HIV Biosynthesis. Plant Physiol 174(4) 2213-2230
Yuriko Watakabe, Sachiko Ono, Tsuneyuki Tanaka, Kazuyuki Hiratsuka. (2011) Non-destructive bioluminescence detection system for monitoring defense gene expression in tobacco BY-2 cells. Plant Biotechnology. 28(3) 295-301
Numata K, Horii Y, Oikawa K, Miyagi Y, Demura T, Ohtani M. (2018) Library screening of cell-penetrating peptide for BY-2 cells, leaves of Arabidopsis, tobacco, tomato, poplar, and rice callus. Sci Rep 8(1) 10966
Fujita K, Aoki Y, Suzuki S. (2018) Antidiabetic effects of novel cell culture established from grapevine, Vitis vinifera cv. Koshu. Cytotechnology 70(3) 993-999
Imamura T, Isozumi N, Higashimura Y, Miyazato A, Mizukoshi H, Ohki S, Mori M. (2019) Isolation of amaranthin synthetase from Chenopodium quinoa and construction of an amaranthin production system using suspension-cultured tobacco BY-2 cells. Plant Biotechnol J 17(5) 969-981
Hikaru Suzuki, Eri Oshita, Nozomi Fujimori, Yuko Nakajima, Yumi Kawagoe, Shunji Suzuki (2015) Grape expansins, VvEXPA14 and VvEXPA18 promote cell expansion in transgenic Arabidopsis plant Plant Cell Tiss Organ Cult 120 1077-1085
Katoh H, Suzuki S, Saitoh T, Takayanagi T. (2009) Cloning and characterization of VIGG, a novel virus-induced grapevine protein, correlated with fruit quality. Plant Physiol Biochem 47(4) 291-9
Nakajima Y, Suzuki S. (2013) Environmental stresses induce misfolded protein aggregation in plant cells in a microtubule-dependent manner. Int J Mol Sci 14(4) 7771-83
Kobayashi T., Niino T., Kobayashi M. (2005) Simple cryopreservation protocol with an encapsulation technique for tobacco BY-2 suspension cell cultures. Plant Biotech. 22(2) 105-112
Yilmaz N, Kodama Y, Numata K. (2020) Revealing the Architecture of the Cell Wall in Living Plant Cells by Bioimaging and Enzymatic Degradation. Biomacromolecules 21(1) 95-103
Biswas MS, Terada R, Mano J. (2020) Inactivation of Carbonyl-Detoxifying Enzymes by H
Yamazoe A, Hayashi K, Kepinski S, Leyser O, Nozaki H. (2005) Characterization of terfestatin A, a new specific inhibitor for auxin signaling. Plant Physiol 139(2) 779-89
Asano M, Doi M, Baba K, Taniguchi M, Shibano M, Tanaka S, Sakaguchi M, Takaoka M, Hirata M, Yanagihara R, Nakahara R, Hayashi Y, Yamaguchi T, Matsumura H, Fujita Y. (2014) Bio-imaging of hydroxyl radicals in plant cells using the fluorescent molecular probe rhodamine B hydrazide, without any pretreatment. J Biosci Bioeng 118(1) 98-100
Yokoo T, Matsumoto K, Ooba T, Morimoto K, Taguchi S. (2015) Enhanced poly(3-hydroxybutyrate) production in transgenic tobacco BY-2 cells using engineered acetoacetyl-CoA reductase. Biosci Biotechnol Biochem 79(6) 986-8
Kurita K, Sakamoto T, Yagi N, Sakamoto Y, Ito A, Nishino N, Sako K, Yoshida M, Kimura H, Seki M, Matsunaga S. (2017) Live imaging of H3K9 acetylation in plant cells. Sci Rep 7 45894
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Arabidopsis / Cultured plant cells, genes:
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rpc00003
more
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Available
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Riken BRC
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Category: plant cell line
| Resource Name : |
VR |
| Species : |
Vitis vinifera |
| Depositor / Developer : |
A. R. Kranz |
| Taxonomy : |
Vitis vinifera
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| Reference : |
Moriyama A, Nojiri M, Watanabe G, Enoki S, Suzuki S. (2020) Exogenous allantoin improves anthocyanin accumulation in grape berry skin at early stage of ripening. J Plant Physiol 253 153253
Mikami N, Konya M, Enoki S, Suzuki S. (2022) Geraniol as a Potential Stimulant for Improving Anthocyanin Accumulation in Grape Berry Skin through ABA Membrane Transport. Plants (Basel) 11(13)
Yamazaki M, Ishida A, Suzuki Y, Aoki Y, Suzuki S, Enoki S. (2021) Ethylene Induced by Sound Stimulation Enhances Anthocyanin Accumulation in Grape Berry Skin through Direct Upregulation of UDP-Glucose: Flavonoid 3-<i>O</i>-Glucosyltransferase. Cells 10(10)
Enoki S, Hattori T, Ishiai S, Tanaka S, Mikami M, Arita K, Nagasaka S, Suzuki S. (2017) Vanillylacetone up-regulates anthocyanin accumulation and expression of anthocyanin biosynthetic genes by inducing endogenous abscisic acid in grapevine tissues. J Plant Physiol 219 22-27
Yin Y, Borges G, Sakuta M, Crozier A, Ashihara H. (2012) Effect of phosphate deficiency on the content and biosynthesis of anthocyanins and the expression of related genes in suspension-cultured grape (Vitis sp.) cells. Plant Physiol Biochem 55 77-84
Tomoki Hattori, Yang Chen, Shinichi Enoki, Daisuke Igarashi, Shunji Suzuki. () Exogenous isoleucine and phenylalanine interact with abscisic acid-mediated anthocyanin accumulation in grape. Folia Hort. 31(1) 147-157
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Arabidopsis / Cultured plant cells, genes:
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rpc00004
more
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Available
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Riken BRC
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Category: plant cell line
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Arabidopsis / Cultured plant cells, genes:
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rpc00008
more
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Available
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Riken BRC
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Category: plant cell line
| Resource Name : |
T87 |
| Species : |
Arabidopsis thaliana |
| Depositor / Developer : |
A. R. Kranz |
| Taxonomy : |
Arabidopsis thaliana
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| Reference : |
Fukazawa J, Teramura H, Murakoshi S, Nasuno K, Nishida N, Ito T, Yoshida M, Kamiya Y, Yamaguchi S, Takahashi Y. (2014) DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell 26(7) 2920-38
Nobusawa T, Kamei M, Ueda H, Matsushima N, Yamatani H, Kusaba M. (2021) Highly pleiotropic functions of CYP78As and AMP1 are regulated in non-cell-autonomous/organ-specific manners. Plant Physiol 186(1) 767-781
Aoyanagi T, Ikeya S, Kobayashi A, Kozaki A. (2020) Gene Regulation via the Combination of Transcription Factors in the INDETERMINATE DOMAIN and GRAS Families. Genes (Basel) 11(6)
Yoneda A, Ohtani M, Katagiri D, Hosokawa Y, Demura T. (2020) Hechtian Strands Transmit Cell Wall Integrity Signals in Plant Cells. Plants (Basel) 9(5)
Takayuki Hata, Kazuki Mukae, Soichrou Satoh, Mitsuhiro Matsuo, Junichi Obokata (2021) Preculture in an enriched nutrient medium greatly enhances the <i>Agrobacterium</i>-mediated transformation efficiency in <i>Arabidopsis</i> T87 cultured cells Plant Biotechnology 38 179-182
Kurokawa M, Nakano M, Kitahata N, Kuchitsu K, Furuya T. (2021) An efficient direct screening system for microorganisms that activate plant immune responses based on plant-microbe interactions using cultured plant cells. Sci Rep 11(1) 7396
Maruyama S, Shibuya N, Kaku H, Desaki Y. (2020) Arabidopsis cell culture for comparable physiological and genetic studies. Plant Signal Behav 15(8) 1781384
Soichiro Noda, Yoshinori Takahashi, Yuta Tsurumaki, Masaomi Yamamura, Nobuyuki Nishikubo, Masatoshi Yamaguchi, Nozomu Sakurai, Takefumi Hattori, Hideyuki Suzuki, Taku Demura, Daisuke Shibata, Shiro Suzuki, Toshiaki Umezawa (2013) ATL54, a RING-H2 domain protein selected by a gene co-expression network analysis, is associated with secondary cell wall formation in Arabidopsis Plant Biotechnology 30 169-177
Li B, Takahashi D, Kawamura Y, Uemura M. (2020) Plasma membrane proteome analyses of Arabidopsis thaliana suspension-cultured cells during cold or ABA treatment: Relationship with freezing tolerance and growth phase. J Proteomics 211 103528
Kotliński M, Knizewski L, Muszewska A, Rutowicz K, Lirski M, Schmidt A, Baroux C, Ginalski K, Jerzmanowski A. (2017) Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol 174(1) 27-34
Tamura T, Endo H, Suzuki A, Sato Y, Kato K, Ohtani M, Yamaguchi M, Demura T. (2019) Affinity-based high-resolution analysis of DNA binding by VASCULAR-RELATED NAC-DOMAIN7 via fluorescence correlation spectroscopy. Plant J 100(2) 298-313
Ma Z, Liu X, Nath S, Sun H, Tran TM, Yang L, Mayor S, Miao Y. (2021) Formin nanoclustering-mediated actin assembly during plant flagellin and DSF signaling. Cell Rep 34(13) 108884
Shigeta T, Zaizen Y, Sugimoto Y, Nakamura Y, Matsuo T, Okamoto S. (2015) Heat shock protein 90 acts in brassinosteroid signaling through interaction with BES1/BZR1 transcription factor. J Plant Physiol 178 69-73
Ogawa-Ohnishi M, Matsubayashi Y. (2015) Identification of three potent hydroxyproline O-galactosyltransferases in Arabidopsis. Plant J 81(5) 736-46
Shigeto J, Itoh Y, Hirao S, Ohira K, Fujita K, Tsutsumi Y. (2015) Simultaneously disrupting AtPrx2, AtPrx25 and AtPrx71 alters lignin content and structure in Arabidopsis stem. J Integr Plant Biol 57(4) 349-56
Takahashi F, Suzuki T, Osakabe Y, Betsuyaku S, Kondo Y, Dohmae N, Fukuda H, Yamaguchi-Shinozaki K, Shinozaki K. (2018) A small peptide modulates stomatal control via abscisic acid in long-distance signalling. Nature 556(7700) 235-238
Sato T, Maekawa S, Yasuda S, Domeki Y, Sueyoshi K, Fujiwara M, Fukao Y, Goto DB, Yamaguchi J. (2011) Identification of 14-3-3 proteins as a target of ATL31 ubiquitin ligase, a regulator of the C/N response in Arabidopsis. Plant J 68(1) 137-46
Yamasaki S, Suzuki A, Yamano Y, Kawabe H, Ueno D, Demura T, Kato K. (2018) Identification of 5''-untranslated regions that function as effective translational enhancers in monocotyledonous plant cells using a novel method of genome-wide analysis. Plant Biotechnol (Tokyo) 35(4) 365-373
Matsuura H, Kiyotaka U, Ishibashi Y, Kubo Y, Yamaguchi M, Hirata K, Demura T, Kato K. (2010) A short period of mannitol stress but not LiCl stress led to global translational repression in plants. Biosci Biotechnol Biochem 74(10) 2110-2
Ueno D, Mikami M, Yamasaki S, Kaneko M, Mukuta T, Demura T, Kato K. (2021) Changes in mRNA Degradation Efficiencies under Varying Conditions Are Regulated by Multiple Determinants in Arabidopsis thaliana. Plant Cell Physiol 62(1) 143-155
Schmücker A, Lei B, Lorković ZJ, Capella M, Braun S, Bourguet P, Mathieu O, Mechtler K, Berger F. (2021) Crosstalk between H2A variant-specific modifications impacts vital cell functions. PLoS Genet 17(6) e1009601
Murakami T, Katsuragi Y, Hirai H, Wataya K, Kondo M, Che FS. (2022) Distribution of flagellin CD2-1, flg22, and flgII-28 recognition systems in plant species and regulation of plant immune responses through these recognition systems. Biosci Biotechnol Biochem 86(4) 490-501
Arae T, Morita K, Imahori R, Suzuki Y, Yasuda S, Sato T, Yamaguchi J, Chiba Y. (2019) Identification of Arabidopsis CCR4-NOT Complexes with Pumilio RNA-Binding Proteins, APUM5 and APUM2. Plant Cell Physiol 60(9) 2015-2025
Ogawa Y, Dansako T, Yano K, Sakurai N, Suzuki H, Aoki K, Noji M, Saito K, Shibata D. (2008) Efficient and high-throughput vector construction and Agrobacterium-mediated transformation of Arabidopsis thaliana suspension-cultured cells for functional genomics. Plant Cell Physiol 49(2) 242-50
Lin C, Fugetsu B, Su Y, Watari F. (2009) Studies on toxicity of multi-walled carbon nanotubes on Arabidopsis T87 suspension cells. J Hazard Mater 170(2-3) 578-83
Oka T, Saito F, Shimma Y, Yoko-o T, Nomura Y, Matsuoka K, Jigami Y. (2010) Characterization of endoplasmic reticulum-localized UDP-D-galactose: hydroxyproline O-galactosyltransferase using synthetic peptide substrates in Arabidopsis. Plant Physiol 152(1) 332-40
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Arabidopsis / Cultured plant cells, genes:
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rpc00030
more
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Available
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Riken BRC
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Category: plant cell line
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Arabidopsis / Cultured plant cells, genes:
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rpc00031
more
|
Available
|
Riken BRC
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Category: plant cell line
| Resource Name : |
Oc |
| Species : |
Oryza sativa |
| Depositor / Developer : |
National Institute for Basic Biology/Dr.Nakata |
| Taxonomy : |
Oryza sativa
|
| Reference : |
Hayatsu M, Suzuki S, Hasegawa A, Tsuchiya S, Sasamoto H. (2014) Effect of NaCl on ionic content and distribution in suspension-cultured cells of the halophyte Sonneratia alba versus the glycophyte Oryza sativa. J Plant Physiol 171(15) 1385-91
Deushi R, Toda E, Koshimizu S, Yano K, Okamoto T. (2021) Effect of Paternal Genome Excess on the Developmental and Gene Expression Profiles of Polyspermic Zygotes in Rice. Plants (Basel) 10(2)
Tanaka Y, Nanasato Y, Omura K, Endoh K, Kawano T, Iwasaki T. (2021) Direct protein delivery into intact plant cells using polyhistidine peptides. Biosci Biotechnol Biochem 85(6) 1405-1414
Yokotani N, Sato Y, Tanabe S, Chujo T, Shimizu T, Okada K, Yamane H, Shimono M, Sugano S, Takatsuji H, Kaku H, Minami E, Nishizawa Y. (2013) WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance. J Exp Bot 64(16) 5085-97
Inoue H, Hayashi N, Matsushita A, Xinqiong L, Nakayama A, Sugano S, Jiang CJ, Takatsuji H. (2013) Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction. Proc Natl Acad Sci U S A 110(23) 9577-82
Ueno Y, Yoshida R, Kishi-Kaboshi M, Matsushita A, Jiang CJ, Goto S, Takahashi A, Hirochika H, Takatsuji H. (2013) MAP kinases phosphorylate rice WRKY45. Plant Signal Behav 8(6) e24510
Matsushita A, Inoue H, Goto S, Nakayama A, Sugano S, Hayashi N, Takatsuji H. (2013) Nuclear ubiquitin proteasome degradation affects WRKY45 function in the rice defense program. Plant J 73(2) 302-13
Aini H, Sato Y, Uno K, Higashiyama T, Okamoto T. (2022) Dynamics of mitochondrial distribution during development and asymmetric division of rice zygotes. Plant Reprod 35(1) 47-60
Mutsuro-Aoki H, Teramura H, Tamukai R, Fukui M, Kusano H, Schepetilnikov M, Ryabova LA, Shimada H. (2021) Dissection of a rice OsMac1 mRNA 5'' UTR to uncover regulatory elements that are responsible for its efficient translation. PLoS One 16(7) e0253488
Kubo T, Yoshimura A, Kurata N. (2022) Loss of OsEAF6, a Subunit of the Histone Acetyltransferase Complex, Causes Hybrid Breakdown in Intersubspecific Rice Crosses. Front Plant Sci 13 866404
Toda E, Ohnishi Y, Okamoto T. (2016) Development of Polyspermic Rice Zygotes. Plant Physiol 171(1) 206-14
Koiso N, Toda E, Ichikawa M, Kato N, Okamoto T. (2017) Development of gene expression system in egg cells and zygotes isolated from rice and maize. Plant Direct 1(3) e00010
Toda E, Ohnishi Y, Okamoto T. (2018) An imbalanced parental genome ratio affects the development of rice zygotes. J Exp Bot 69(10) 2609-2619
Toda E, Koiso N, Takebayashi A, Ichikawa M, Kiba T, Osakabe K, Osakabe Y, Sakakibara H, Kato N, Okamoto T. (2019) An efficient DNA- and selectable-marker-free genome-editing system using zygotes in rice. Nat Plants 5(4) 363-368
Rattanawong K, Koiso N, Toda E, Kinoshita A, Tanaka M, Tsuji H, Okamoto T. (2021) Regulatory functions of ROS dynamics via glutathione metabolism and glutathione peroxidase activity in developing rice zygote. Plant J 108(4) 1097-1115
Kumiko Ochiai, Yosuke Nomura, Asuka Uesugi, Toru Matoh (2022) Biuret toxicity induces accumulation of nitrogen-rich compounds in rice plants Plant and Soil
Taoka KI, Kawahara I, Shinya S, Harada KI, Yamashita E, Shimatani Z, Furuita K, Muranaka T, Oyama T, Terada R, Nakagawa A, Fujiwara T, Tsuji H, Kojima C. (2022) Multifunctional chemical inhibitors of the florigen activation complex discovered by structure-based high-throughput screening. Plant J 112(6) 1337-1349
Toda E, Kiba T, Kato N, Okamoto T. (2022) Isolation of gametes and zygotes from Setaria viridis. J Plant Res 135(4) 627-633
Watanabe Y, Nobe Y, Taoka M, Okamoto T. (2023) The Feeder Effects of Cultured Rice Cells on the Early Development of Rice Zygotes. Int J Mol Sci 24(22)
Xiao-ming Tan, Chun Lin, Bunshi Fugetsu. (2009) Studies on toxicity of multi-walled carbon nanotubes on suspension rice cells. Carbon 47(15) 3479-3487
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Ohnishi Y, Hoshino R, Okamoto T. (2014) Dynamics of Male and Female Chromatin during Karyogamy in Rice Zygotes. Plant Physiol 165(4) 1533-1543
Sukawa Y, Okamoto T. (2018) Cell cycle in egg cell and its progression during zygotic development in rice. Plant Reprod 31(1) 107-116
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Ohnishi Y, Kokubu I, Kinoshita T, Okamoto T. (2019) Sperm Entry into the Egg Cell Induces the Progression of Karyogamy in Rice Zygotes. Plant Cell Physiol 60(8) 1656-1665
Sasamoto H, Murashige-Baba T, Inoue A, Sato T, Hayashi S, Hasegawa A. (2013) Development of a New Method for Bioassay of Allelopathy Using Protoplasts of a Leguminous Plant Mucuna pruriens With a High Content of the Allelochemical L-DOPA. J Plant Studies Vol2,No.2
Ochiai K, Uesugi A, Masuda Y, Nishii M, Matoh T. (2020) Overexpression of exogenous <i>biuret hydrolase</i> in rice plants confers tolerance to biuret toxicity. Plant Direct 4(11) e00290
Uchiumi T, Shinkawa T, Isobe T, Okamoto T. (2007) Identification of the major protein components of rice egg cells. J Plant Res 120(4) 575-9
Nakajima K, Uchiumi T, Okamoto T. (2010) Positional relationship between the gamete fusion site and the first division plane in the rice zygote. J Exp Bot 61(11) 3101-5
Nakashima K, Tran LS, Van Nguyen D, Fujita M, Maruyama K, Todaka D, Ito Y, Hayashi N, Shinozaki K, Yamaguchi-Shinozaki K. (2007) Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. Plant J 51(4) 617-30
Sato A, Toyooka K, Okamoto T. (2010) Asymmetric cell division of rice zygotes located in embryo sac and produced by in vitro fertilization. Sex Plant Reprod 23(3) 211-7
Noda S, Koshiba T, Hattori T, Yamaguchi M, Suzuki S, Umezawa T. (2015) The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63. Planta 242(3) 589-600
Rahman MH, Toda E, Kobayashi M, Kudo T, Koshimizu S, Takahara M, Iwami M, Watanabe Y, Sekimoto H, Yano K, Okamoto T. (2019) Expression of Genes from Paternal Alleles in Rice Zygotes and Involvement of OsASGR-BBML1 in Initiation of Zygotic Development. Plant Cell Physiol 60(4) 725-737
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Arabidopsis / Cultured plant cells, genes:
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rpc00032
more
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Available
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Riken BRC
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Category: plant cell line
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Arabidopsis / Cultured plant cells, genes:
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rpc00033
more
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Available
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Riken BRC
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Category: plant cell line
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Arabidopsis / Cultured plant cells, genes:
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rpc00034
more
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Available
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Riken BRC
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Category: plant cell line
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Arabidopsis / Cultured plant cells, genes:
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rpc00035
more
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Available
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Riken BRC
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Category: plant cell line
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Arabidopsis / Cultured plant cells, genes:
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rpc00040
more
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Available
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Riken BRC
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Category: plant cell line
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Arabidopsis / Cultured plant cells, genes:
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rpc00041
more
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Available
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Riken BRC
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Category: plant cell line
| Resource Name : |
GT16 |
| Species : |
Nicotiana tabacum |
| Depositor / Developer : |
Ratcliffe |
| Taxonomy : |
Nicotiana tabacum
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| Reference : |
Leah Ginsberg, Robin McDonald, Qinchen Lin, Rodinde Hendrickx, Giada Spigolon, Guruswami Ravichandran, Chiara Daraio, Eleftheria Roumeli (2022) Cell wall and cytoskeletal contributions in single cell biomechanics of Nicotiana tabacum Quantitative Plant Biology 3
Nambo M, Kurihara D, Yamada T, Nishiwaki-Ohkawa T, Kadofusa N, Kimata Y, Kuwata K, Umeda M, Ueda M. (2016) Combination of Synthetic Chemistry and Live-Cell Imaging Identified a Rapid Cell Division Inhibitor in Tobacco and Arabidopsis thaliana. Plant Cell Physiol 57(11) 2255-2268
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Arabidopsis / Cultured plant cells, genes:
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rpc00046
more
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Available
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Riken BRC
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Category: plant cell line
| Resource Name : |
GCR237 |
| Species : |
Solanum lycopersicum |
| Depositor / Developer : |
Ratcliffe |
| Taxonomy : |
Solanum lycopersicum
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| Reference : |
Mesihovic A, Ullrich S, Rosenkranz RRE, Gebhardt P, Bublak D, Eich H, Weber D, Berberich T, Scharf KD, Schleiff E, Fragkostefanakis S. (2022) HsfA7 coordinates the transition from mild to strong heat stress response by controlling the activity of the master regulator HsfA1a in tomato. Cell Rep 38(2) 110224
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Arabidopsis / Cultured plant cells, genes:
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rpc00050
more
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Available
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Riken BRC
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Category: plant cell line
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Arabidopsis / Cultured plant cells, genes:
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rpc00051
more
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Available
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Riken BRC
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Category: plant cell line
| Resource Name : |
DG330 |
| Species : |
Glycine max |
| Depositor / Developer : |
National Institute for Basic Biology/Dr.Nakata |
| Taxonomy : |
Glycine max
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| Reference : |
Okuda A, Matsusaki M, Masuda T, Urade R. (2017) Identification and characterization of GmPDIL7, a soybean ER membrane-bound protein disulfide isomerase family protein. FEBS J 284(3) 414-428
Matsusaki M, Okuda A, Matsuo K, Gekko K, Masuda T, Naruo Y, Hirose A, Kono K, Tsuchi Y, Urade R. (2019) Regulation of plant ER oxidoreductin 1 (ERO1) activity for efficient oxidative protein folding. J Biol Chem 294(49) 18820-18835
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Arabidopsis / Cultured plant cells, genes:
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rpc00020
more
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Available
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Riken BRC
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Category: plant cell line
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