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Reference Related Resource Count: 23,108
Organism Prokaryotes (E. coli) Category Keio collection strain or clone Strain

Associated Resources List
392 items Page:    1 / 20 1 | 2 | 3 | 4 | 5 | 6 | 7 next 1 - 20 / 392 Show All
Prokaryotes (E. coli): JW4094-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : cadC
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Ude S, Lassak J, Starosta AL, Kraxenberger T, Wilson DN, Jung K. (2013) Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches. Science 339(6115) 82-5
Prokaryotes (E. coli): JW5702-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : crp
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Shimada T, Fujita N, Yamamoto K, Ishihama A. (2011) Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources. PLoS One 6(6) e20081
Chong H, Huang L, Yeow J, Wang I, Zhang H, Song H, Jiang R. (2013) Improving ethanol tolerance of Escherichia coli by rewiring its global regulator cAMP receptor protein (CRP). PLoS One 8(2) e57628
Neves HI, Machado GT, Ramos TCDS, Yang HM, Yagil E, Spira B. (2020) Competition for nutritional resources masks the true frequency of bacterial mutants. BMC Biol 18(1) 194
Shimada T, Yoshida H, Ishihama A. (2013) Involvement of cyclic AMP receptor protein in regulation of the rmf gene encoding the ribosome modulation factor in Escherichia coli. J Bacteriol 195(10) 2212-9
Prokaryotes (E. coli): JW1023-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : csgD
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Ogasawara H, Yamamoto K, Ishihama A. (2010) Regulatory role of MlrA in transcription activation of csgD, the master regulator of biofilm formation in Escherichia coli. FEMS Microbiol Lett 312(2) 160-8
Sugimoto S, Yamanaka K, Niwa T, Terasawa Y, Kinjo Y, Mizunoe Y, Ogura T. (2021) Hierarchical Model for the Role of J-Domain Proteins in Distinct Cellular Functions. J Mol Biol 433(3) 166750
Ogasawara H, Yamamoto K, Ishihama A. (2011) Role of the biofilm master regulator CsgD in cross-regulation between biofilm formation and flagellar synthesis. J Bacteriol 193(10) 2587-97
Prokaryotes (E. coli): JW0824-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : deoR
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Butala M, Sonjak S, Kamenšek S, Hodošček M, Browning DF, Žgur-Bertok D, Busby SJ. (2012) Double locking of an Escherichia coli promoter by two repressors prevents premature colicin expression and cell lysis. Mol Microbiol 86(1) 129-39
Prokaryotes (E. coli): JW0895-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : ihfB
Cell Shape : Long
Taxonomy : Escherichia coli
Reference : Ogasawara H, Yamada K, Kori A, Yamamoto K, Ishihama A. (2010) Regulation of the Escherichia coli csgD promoter: interplay between five transcription factors. Microbiology (Reading) 156(Pt 8) 2470-2483
Prokaryotes (E. coli): JW1225-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : hns
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Ogasawara H, Yamada K, Kori A, Yamamoto K, Ishihama A. (2010) Regulation of the Escherichia coli csgD promoter: interplay between five transcription factors. Microbiology (Reading) 156(Pt 8) 2470-2483
Korea CG, Badouraly R, Prevost MC, Ghigo JM, Beloin C. (2010) Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities. Environ Microbiol 12(7) 1957-77
Shimada T, Yamamoto K, Ishihama A. (2009) Involvement of the leucine response transcription factor LeuO in regulation of the genes for sulfa drug efflux. J Bacteriol 191(14) 4562-71
Shimada T, Bridier A, Briandet R, Ishihama A. (2011) Novel roles of LeuO in transcription regulation of E. coli genome: antagonistic interplay with the universal silencer H-NS. Mol Microbiol 82(2) 378-97
Prokaryotes (E. coli): JW0075-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : leuO
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Shimada T, Yamamoto K, Ishihama A. (2009) Involvement of the leucine response transcription factor LeuO in regulation of the genes for sulfa drug efflux. J Bacteriol 191(14) 4562-71
Shimada T, Bridier A, Briandet R, Ishihama A. (2011) Novel roles of LeuO in transcription regulation of E. coli genome: antagonistic interplay with the universal silencer H-NS. Mol Microbiol 82(2) 378-97
Prokaryotes (E. coli): JW4024-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : soxR
Cell Shape : Long
Taxonomy : Escherichia coli
Reference : Patil S, Valdramidis VP, Karatzas KA, Cullen PJ, Bourke P. (2011) Assessing the microbial oxidative stress mechanism of ozone treatment through the responses of Escherichia coli mutants. J Appl Microbiol 111(1) 136-44
Nakata K, Koh MM, Tsuchido T, Matsumura Y. (2010) All genomic mutations in the antimicrobial surfactant-resistant mutant, Escherichia coli OW66, are involved in cell resistance to surfactant. Appl Microbiol Biotechnol 87(5) 1895-905
Prokaryotes (E. coli): JW4023-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : soxS
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Patil S, Valdramidis VP, Karatzas KA, Cullen PJ, Bourke P. (2011) Assessing the microbial oxidative stress mechanism of ozone treatment through the responses of Escherichia coli mutants. J Appl Microbiol 111(1) 136-44
Prokaryotes (E. coli): JW0198-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : yafC
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Hizukuri Y, Akiyama Y. (2012) PDZ domains of RseP are not essential for sequential cleavage of RseA or stress-induced σ(E) activation in vivo. Mol Microbiol 86(5) 1232-45
Prokaryotes (E. coli): JW0078-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : fruR
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Shimada T, Yamamoto K, Ishihama A. (2011) Novel members of the Cra regulon involved in carbon metabolism in Escherichia coli. J Bacteriol 193(3) 649-59
Gore AL, Payne SM. (2010) CsrA and Cra influence Shigella flexneri pathogenesis. Infect Immun 78(11) 4674-82
Prokaryotes (E. coli): JW1702-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : ihfA
Cell Shape : Long
Taxonomy : Escherichia coli
Reference : Ogasawara H, Yamada K, Kori A, Yamamoto K, Ishihama A. (2010) Regulation of the Escherichia coli csgD promoter: interplay between five transcription factors. Microbiology (Reading) 156(Pt 8) 2470-2483
Prokaryotes (E. coli): JW3732-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : rbsR
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Shimada T, Kori A, Ishihama A. (2013) Involvement of the ribose operon repressor RbsR in regulation of purine nucleotide synthesis in Escherichia coli. FEMS Microbiol Lett 344(2) 159-65
Prokaryotes (E. coli): JW0114-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : acnB
Cell Shape : Short
Taxonomy : Escherichia coli
Reference : Calderón IL, Elías AO, Fuentes EL, Pradenas GA, Castro ME, Arenas FA, Pérez JM, Vásquez CC. (2009) Tellurite-mediated disabling of [4Fe-4S] clusters of Escherichia coli dehydratases. Microbiology (Reading) 155(Pt 6) 1840-1846
Prokaryotes (E. coli): JW0419-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : cyoD
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Prigent-Combaret C, Sanguin H, Champier L, Bertrand C, Monnez C, Colinon C, Blaha D, Ghigo JM, Cournoyer B. (2012) The bacterial thiopurine methyltransferase tellurite resistance process is highly dependent upon aggregation properties and oxidative stress response. Environ Microbiol 14(10) 2645-60
Prokaryotes (E. coli): JW0421-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : cyoB
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Hao Z, Lou H, Zhu R, Zhu J, Zhang D, Zhao BS, Zeng S, Chen X, Chan J, He C, Chen PR. (2014) The multiple antibiotic resistance regulator MarR is a copper sensor in Escherichia coli. Nat Chem Biol 10(1) 21-8
Prokaryotes (E. coli): JW0715-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : sucA
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Shim da J, Nemeria NS, Balakrishnan A, Patel H, Song J, Wang J, Jordan F, Farinas ET. (2011) Assignment of function to histidines 260 and 298 by engineering the E1 component of the Escherichia coli 2-oxoglutarate dehydrogenase complex; substitutions that lead to acceptance of substrates lacking the 5-carboxyl group. Biochemistry 50(35) 7705-9
Prokaryotes (E. coli): JW0885-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : pflA
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Shozui F, Matsumoto K, Nakai T, Yamada M, Taguchi S. (2010) Biosynthesis of novel terpolymers poly(lactate-co-3-hydroxybutyrate-co-3-hydroxyvalerate)s in lactate-overproducing mutant Escherichia coli JW0885 by feeding propionate as a precursor of 3-hydroxyvalerate. Appl Microbiol Biotechnol 85(4) 949-54
Prokaryotes (E. coli): JW0886-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : pflB
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Pieper R, Fisher CR, Suh MJ, Huang ST, Parmar P, Payne SM. (2013) Analysis of the proteome of intracellular Shigella flexneri reveals pathways important for intracellular growth. Infect Immun 81(12) 4635-48
Travier L, Rendueles O, Ferrières L, Herry JM, Ghigo JM. (2013) Escherichia coli resistance to nonbiocidal antibiofilm polysaccharides is rare and mediated by multiple mutations leading to surface physicochemical modifications. Antimicrob Agents Chemother 57(8) 3960-8
Prokaryotes (E. coli): JW1228-KC more  Available National Institute of GENETICS
Category: Keio collection
Gene : adhE
Cell Shape : Normal
Taxonomy : Escherichia coli
Reference : Mizuno S, Sakurai T, Nabasama M, Kawakami K, Hiroe A, Taguchi S, Tsuge T. (2021) The influence of medium composition on the microbial secretory production of hydroxyalkanoate oligomers. J Gen Appl Microbiol 67(4) 134-141
Goto S, Miyahara Y, Taguchi S, Tsuge T, Hiroe A. (2022) Enhanced Production of (<i>R</i>)-3-Hydroxybutyrate Oligomers by Coexpression of Molecular Chaperones in Recombinant <i>Escherichia coli</i> Harboring a Polyhydroxyalkanoate Synthase Derived from <i>Bacillus cereus</i> YB-4. Microorganisms 10(2)
Sakurai T, Mizuno S, Miyahara Y, Hiroe A, Taguchi S, Tsuge T. (2022) Optimization of Culture Conditions for Secretory Production of 3-Hydroxybutyrate Oligomers Using Recombinant <i>Escherichia coli</i>. Front Bioeng Biotechnol 10 829134
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