Tabs(ALL, DNA, BLAST, GO, Taxonomy, DO, Reference) are clickable.
|
Reference Related Resource Count : 25,573
|
Associated Resources List
|
1057 items
|
|
|
|
Organism |
strain |
Prokaryotes (E. coli)
|
Keio collection |
392 |
|
Large-scale chromosomal deletion mutants |
9 |
|
Transposon insertion disruptant |
51 |
|
Transposon insertion disruptant (cis partial doublet strain) |
2 |
|
Phage |
1 |
|
|
Organism |
DNA |
Prokaryotes (E. coli)
|
Mobile plasmid clone |
30 |
|
ASKA clones (GFP Minus) |
10 |
|
Cloning Vector Collection |
561 |
|
Gateway Entry Clone library |
1 |
|
|
Prokaryotes (E. coli):
|
JW4094-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW5702-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Gene : |
crp |
Cell Shape : |
Normal |
Taxonomy : |
Escherichia coli
|
Reference : |
Shimada T, Fujita N, Yamamoto K, Ishihama A. (2011) Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources. PLoS One 6(6) e20081
Chong H, Huang L, Yeow J, Wang I, Zhang H, Song H, Jiang R. (2013) Improving ethanol tolerance of Escherichia coli by rewiring its global regulator cAMP receptor protein (CRP). PLoS One 8(2) e57628
Neves HI, Machado GT, Ramos TCDS, Yang HM, Yagil E, Spira B. (2020) Competition for nutritional resources masks the true frequency of bacterial mutants. BMC Biol 18(1) 194
Shimada T, Yoshida H, Ishihama A. (2013) Involvement of cyclic AMP receptor protein in regulation of the rmf gene encoding the ribosome modulation factor in Escherichia coli. J Bacteriol 195(10) 2212-9
|
Prokaryotes (E. coli):
|
JW1023-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Gene : |
csgD |
Cell Shape : |
Normal |
Taxonomy : |
Escherichia coli
|
Reference : |
Ogasawara H, Yamamoto K, Ishihama A. (2010) Regulatory role of MlrA in transcription activation of csgD, the master regulator of biofilm formation in Escherichia coli. FEMS Microbiol Lett 312(2) 160-8
Sugimoto S, Yamanaka K, Niwa T, Terasawa Y, Kinjo Y, Mizunoe Y, Ogura T. (2021) Hierarchical Model for the Role of J-Domain Proteins in Distinct Cellular Functions. J Mol Biol 433(3) 166750
Ogasawara H, Yamamoto K, Ishihama A. (2011) Role of the biofilm master regulator CsgD in cross-regulation between biofilm formation and flagellar synthesis. J Bacteriol 193(10) 2587-97
|
Prokaryotes (E. coli):
|
JW0824-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW0895-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW1225-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Gene : |
hns |
Cell Shape : |
Normal |
Taxonomy : |
Escherichia coli
|
Reference : |
Ogasawara H, Yamada K, Kori A, Yamamoto K, Ishihama A. (2010) Regulation of the Escherichia coli csgD promoter: interplay between five transcription factors. Microbiology (Reading) 156(Pt 8) 2470-2483
Korea CG, Badouraly R, Prevost MC, Ghigo JM, Beloin C. (2010) Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities. Environ Microbiol 12(7) 1957-77
Shimada T, Yamamoto K, Ishihama A. (2009) Involvement of the leucine response transcription factor LeuO in regulation of the genes for sulfa drug efflux. J Bacteriol 191(14) 4562-71
Shimada T, Bridier A, Briandet R, Ishihama A. (2011) Novel roles of LeuO in transcription regulation of E. coli genome: antagonistic interplay with the universal silencer H-NS. Mol Microbiol 82(2) 378-97
|
Prokaryotes (E. coli):
|
JW0075-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW4024-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW4023-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW0198-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW0078-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW1702-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW3732-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW0114-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW0419-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW0421-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Gene : |
cyoB |
Cell Shape : |
Normal |
Taxonomy : |
Escherichia coli
|
Reference : |
Hao Z, Lou H, Zhu R, Zhu J, Zhang D, Zhao BS, Zeng S, Chen X, Chan J, He C, Chen PR. (2014) The multiple antibiotic resistance regulator MarR is a copper sensor in Escherichia coli. Nat Chem Biol 10(1) 21-8
|
Prokaryotes (E. coli):
|
JW0715-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW0885-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW0886-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Prokaryotes (E. coli):
|
JW1228-KC
|
Available
|
National Institute of GENETICS
|
Category: Keio collection
Gene : |
adhE |
Cell Shape : |
Normal |
Taxonomy : |
Escherichia coli
|
Reference : |
Mizuno S, Sakurai T, Nabasama M, Kawakami K, Hiroe A, Taguchi S, Tsuge T. (2021) The influence of medium composition on the microbial secretory production of hydroxyalkanoate oligomers. J Gen Appl Microbiol 67(4) 134-141
Goto S, Miyahara Y, Taguchi S, Tsuge T, Hiroe A. (2022) Enhanced Production of (<i>R</i>)-3-Hydroxybutyrate Oligomers by Coexpression of Molecular Chaperones in Recombinant <i>Escherichia coli</i> Harboring a Polyhydroxyalkanoate Synthase Derived from <i>Bacillus cereus</i> YB-4. Microorganisms 10(2)
Sakurai T, Mizuno S, Miyahara Y, Hiroe A, Taguchi S, Tsuge T. (2022) Optimization of Culture Conditions for Secretory Production of 3-Hydroxybutyrate Oligomers Using Recombinant <i>Escherichia coli</i>. Front Bioeng Biotechnol 10 829134
|
Prokaryotes (E. coli):
|
1
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
ORF No.(Japan) : |
101#1 |
ORF No.(USA) : |
b0002 |
Gene Name : |
thrA |
Gene Ontology : |
GO:0003824, GO:0004072, GO:0004412, GO:0005488, GO:0008152, GO:0016740, GO:0009067, GO:0009088, GO:0016301, GO:0016491, GO:0016597, GO:0008652
|
Taxonomy : |
unidentified plasmid
|
Reference : |
Fujita M., Takeda K., Kohyama N., Doi Y., and Matsunaka H. (2002) Genotypic variation in polyphenol content of barley grain. Euphytica 124 55-58
Takehana Y, Nagai N, Matsuda M, Tsuchiya K, Sakaizumi M. (2003) Geographic variation and diversity of the cytochrome b gene in Japanese wild populations of medaka, Oryzias latipes. Zoolog Sci 20(10) 1279-91
|
Prokaryotes (E. coli):
|
17
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
ORF No.(Japan) : |
103#2 |
ORF No.(USA) : |
b0023 |
Gene Name : |
rpsT |
Gene Ontology : |
GO:0003723, GO:0003735, GO:0005622, GO:0030529, GO:0006412, GO:0019843, GO:0005840
|
Taxonomy : |
unidentified plasmid
|
Reference : |
Bessho-Uehara K, Yamagata Y, Takashi T, Makino T, Yasui H, Yoshimura A, Ashikari M. (2021) Exploring the Loci Responsible for Awn Development in Rice through Comparative Analysis of All AA Genome Species. Plants (Basel) 10(4)
|
Prokaryotes (E. coli):
|
23
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
168
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
ORF No.(Japan) : |
121#6 |
ORF No.(USA) : |
b0179 |
Gene Name : |
firA/lpxD |
Gene Ontology : |
GO:0008415, GO:0008610, GO:0046677, GO:0016740, GO:0016747, GO:0009245
|
Taxonomy : |
unidentified plasmid
|
Reference : |
Koo BM, Kritikos G, Farelli JD, Todor H, Tong K, Kimsey H, Wapinski I, Galardini M, Cabal A, Peters JM, Hachmann AB, Rudner DZ, Allen KN, Typas A, Gross CA. (2017) Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis. Cell Syst 4(3) 291-305.e7
|
Prokaryotes (E. coli):
|
602
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
616
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
620
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
624
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
630
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
638
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
ORF No.(Japan) : |
172#5 |
ORF No.(USA) : |
b0680 |
Gene Name : |
glnS |
Gene Ontology : |
GO:0004812, GO:0004819, GO:0005524, GO:0016874, GO:0000166, GO:0006418, GO:0006424, GO:0006425, GO:0005737, GO:0006412
|
Taxonomy : |
unidentified plasmid
|
Reference : |
Azhaguvel P, Komatsuda T. (2007) A phylogenetic analysis based on nucleotide sequence of a marker linked to the brittle rachis locus indicates a diphyletic origin of barley. Ann Bot 100(5) 1009-15
|
Prokaryotes (E. coli):
|
644
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
668
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
707
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
725
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
726
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
728
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
729
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
730
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
ORF No.(Japan) : |
201#8 |
ORF No.(USA) : |
b0775 |
Gene Name : |
bioB |
Gene Ontology : |
GO:0008152, GO:0051539, GO:0016740, GO:0046872, GO:0051536, GO:0051537, GO:0009102, GO:0003824, GO:0004076, GO:0005506
|
Taxonomy : |
unidentified plasmid
|
Reference : |
Azhaguvel P, Komatsuda T. (2007) A phylogenetic analysis based on nucleotide sequence of a marker linked to the brittle rachis locus indicates a diphyletic origin of barley. Ann Bot 100(5) 1009-15
|
Prokaryotes (E. coli):
|
742
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
Prokaryotes (E. coli):
|
743
|
Available
|
National Institute of GENETICS
|
Category: Mobile plasmid clone
|