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Reference Related Resource Count : 32,292

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3206 items
Strain   3206 items Go to list of Strain
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Strain List 3206 items 1 - 20 / 3206
General microbes: JCM9641  Available Riken BRC
Category: Algae
History : <-- CBS 605.66 <-- W. B. Cooke SEC L-1690.
xref ID : ATCC 16528; CBS 605.66
Scientific Name : Prototheca stagnora (Cooke) Pore
Old Scientific Name : Prototheca stagnora
Source : Bottom sludge, Ohio, USA
Phylogeny : https://identifiers.org/insdc:AB097091
Medium Temp, etc : POTATO--DEXTROSE AGAR, YM AGAR, YM BROTH, 25C
Taxonomy : Prototheca stagnorum
Reference : Yoneda K, Ogata M, Nishiyama K, Fukuda K, Yasuda S, Igoshi K, Kinoshita H (2019) Crystal Structure of Cell Surface Glyceraldehyde-3-Phosphate Dehydrogenase fromLactobacillus plantarum:Insight into the Mercury Binding Mechanism. (in Japanese) Milk Science 69 3-11
General microbes: JCM15793  Available Riken BRC
Category: Algae
History : <-- K. Makimura strain asahi57.
xref ID : CBS 11262; DSM 22084
Scientific Name : Prototheca cutis Satoh & Makimura
Old Scientific Name : Prototheca cutis
Source : Inflamed skin of a male patient with protothecosis, Asahi General Hospital, Chiba, Japan
Phylogeny : https://identifiers.org/insdc:AB470468; https://identifiers.org/insdc:AB470469
Medium Temp, etc : POTATO--DEXTROSE AGAR, YM AGAR, YM BROTH, 25C
Biosafety Level : BSL 2
Taxonomy : Prototheca cutis
Reference : Wu Q, Lan Y, Xu H, Cao Y (2019) Characterization of the complete mitochondrial genome and phylogenetic analysis of Prototheca stagnorum (chlorellales: Chlorellaceae). Mitochondrial DNA Part B 4 4000-4001
General microbes: JCM31123  Available Riken BRC
Category: Algae
History : <-- J. Sugiyama<-- TechnoSuruga Lab. Co. Ltd. Japan<-- T6713-13-10.
xref ID : CBS 140669
Scientific Name : Prototheca tumulicola Nagatsuka et al.
Old Scientific Name : Prototheca tumulicola
Source : Soil on the floor below the painting of the group of women on the east wall inside the Takamatsuzuka Tumulus, Asuka, Nara Pref., Japan
Phylogeny : https://identifiers.org/insdc:LC090551; https://identifiers.org/insdc:LC090552
Medium Temp, etc : YM AGAR, 25C
Taxonomy : Prototheca tumulicola
Reference : Jagielski T, Bakuła Z, Gawor J, Maciszewski K, Kusber WH, Dyląg M, Nowakowska J, Gromadka R, Karnkowska A (2019) The genus Prototheca (Trebouxiophyceae, Chlorophyta) revisited: Implications from molecular taxonomic studies. Algal Research 43 101639
General microbes: JCM32111  Available Riken BRC
Category: Algae
History : <-- A. Savarajara and S. Kunthiphun<-- Chulalongkorn Univ. Thailand<-- YMTS5-2.
Scientific Name : Prototheca paracutis Kunthiphun et al.
Old Scientific Name : Prototheca paracutis
Source : Water in a mangrove forest, Trat, Thailand
Phylogeny : https://identifiers.org/insdc:LC270820; https://identifiers.org/insdc:LC270823
Medium Temp, etc : YM AGAR, 25C
Taxonomy : Prototheca paracutis
Reference : Wu Q, Lan Y, Xu H, Cao Y (2019) Characterization of the complete mitochondrial genome and phylogenetic analysis of Prototheca stagnorum (chlorellales: Chlorellaceae). Mitochondrial DNA Part B 4 4000-4001
General microbes: JCM32112  Available Riken BRC
Category: Algae
History : <-- A. Savarajara and S. Kunthiphun<-- Chulalongkorn Univ. Thailand<-- YMTW3-1.
xref ID : TBRC 8745
Scientific Name : Prototheca paracutis Kunthiphun et al.
Old Scientific Name : Prototheca paracutis
Source : Soil in a mangrove forest, Trat, Thailand
Phylogeny : https://identifiers.org/insdc:LC270821; https://identifiers.org/insdc:LC270822; https://identifiers.org/insdc:LC320030
Medium Temp, etc : YM AGAR, 25C
Taxonomy : Prototheca paracutis
Reference : Wu Q, Lan Y, Xu H, Cao Y (2019) Characterization of the complete mitochondrial genome and phylogenetic analysis of Prototheca stagnorum (chlorellales: Chlorellaceae). Mitochondrial DNA Part B 4 4000-4001
General microbes: JCM7785  Available Riken BRC
Category: Archaea
History : <-- T. Takashina TR-1.
xref ID : ATCC 49778; CGMCC 1.3717; CGMCC 1.6162; DSM 6131; NBRC 101032; NCIMB 13157; VKM B-2009
Scientific Name : Haloarcula japonica Takashina et al. 1991
Old Scientific Name : Haloarcula japonica
Source : Saltern soil at Noto Peninsula, Japan
Phylogeny : https://identifiers.org/insdc:AB477146; https://identifiers.org/insdc:D28872; https://identifiers.org/insdc:EF645684; https://identifiers.org/insdc:EF645685; https://identifiers.org/insdc:EF645686
Medium Temp, etc : CM+YE MEDIUM, HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C
Taxonomy : Haloarcula japonica
Reference : Sueda R, Yoshida K, Onodera M, Fukui T, Yatsunami R, Nakamura S. (2021) Characterization of a GlgC homolog from extremely halophilic archaeon Haloarcula japonica. Biosci Biotechnol Biochem 85(6) 1441-1447
Enomoto S, Shimane Y, Ihara K, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R, Takai K, Minegishi H. (2020) <i>Haloarcula mannanilytica</i> sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt. Int J Syst Evol Microbiol 70(12) 6331-6337
Nagaoka S, Sugiyama N, Yatsunami R, Nakamura S. (2021) Characterization of 3-isopropylmalate dehydrogenase from extremely halophilic archaeon Haloarcula japonica. Biosci Biotechnol Biochem 85(9) 1986-1994
Sato Y, Kimura H. (2019) Temperature-dependent expression of different guanine-plus-cytosine content 16S rRNA genes in Haloarcula strains of the class Halobacteria. Antonie Van Leeuwenhoek 112(2) 187-201
Yang Y, Cui HL, Zhou PJ, Liu SJ. (2007) Haloarcula amylolytica sp. nov., an extremely halophilic archaeon isolated from Aibi salt lake in Xin-Jiang, China. Int J Syst Evol Microbiol 57(Pt 1) 103-106
Cui HL, Zhou PJ, Oren A, Liu SJ. (2009) Intraspecific polymorphism of 16S rRNA genes in two halophilic archaeal genera, Haloarcula and Halomicrobium. Extremophiles 13(1) 31-7
General microbes: JCM8422  Available Riken BRC
Category: Archaea
History : <-- DSM 3638 <-- K. O. Stetter and G. Fiala Vc 1.
xref ID : ATCC 43587; CGMCC 1.2516; DSM 3638
Scientific Name : Pyrococcus furiosus Fiala and Stetter 1986
Old Scientific Name : Pyrococcus furiosus
Source : Hot sediment at the beach of Porto di Levante, Vulcano Island, Italy
Phylogeny : https://identifiers.org/insdc:AB603518
Medium Temp, etc : PYROCOCCUS MEDIUM, 95C
Taxonomy : Pyrococcus furiosus
Reference : Hamana, K., Hosoya, R., Niitsu, M., Hayashi, H., and Itoh, T. (2008) Temperature and salt dependent long linear and branched polyamine syntheses in the thermophiles belonging to the domain Archaea. J Jpn Soc Extremophiles 7 121-27
General microbes: JCM8558  Available Riken BRC
Category: Archaea
History : <-- DSM 2476 <-- W. Zillig Vu13.
xref ID : ATCC 35543; DSM 2476
Scientific Name : Thermococcus celer Zillig 1983
Old Scientific Name : Thermococcus celer
Source : Solfataric marine water hole on a beach of Vulcano, Italy
Phylogeny : https://identifiers.org/insdc:AB603519; https://identifiers.org/insdc:AY099174; https://identifiers.org/insdc:M12711; https://identifiers.org/insdc:M21529; https://identifiers.org/insdc:M67497
Medium Temp, etc : THERMOCOCCUS CELER MEDIUM, THERMOCOCCUS MEDIUM, 85C
Taxonomy : Thermococcus celer
Reference : Kuwabara T, Minaba M, Ogi N, Kamekura M. (2007) Thermococcus celericrescens sp. nov., a fast-growing and cell-fusing hyperthermophilic archaeon from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 57(Pt 3) 437-443
Pikuta EV, Marsic D, Itoh T, Bej AK, Tang J, Whitman WB, Ng JD, Garriott OK, Hoover RB. (2007) Thermococcus thioreducens sp. nov., a novel hyperthermophilic, obligately sulfur-reducing archaeon from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 57(Pt 7) 1612-1618
General microbes: JCM8559  Available Riken BRC
Category: Archaea
History : <-- DSM 5262 <-- A. Neuner K-3.
xref ID : DSM 5262
Scientific Name : Thermococcus stetteri Miroshnichenko et al. 1990
Old Scientific Name : Thermococcus stetteri
Source : Marine solfataric fields of the Kraternaya cove, Northern Kurils
Phylogeny : https://identifiers.org/insdc:AY099186
Medium Temp, etc : THERMOCOCCUS MEDIUM, THERMOCOCCUS STETTERI MEDIUM, 75C
Taxonomy : Thermococcus stetteri
Reference : Kuwabara T, Minaba M, Ogi N, Kamekura M. (2007) Thermococcus celericrescens sp. nov., a fast-growing and cell-fusing hyperthermophilic archaeon from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 57(Pt 3) 437-443
General microbes: JCM8863  Available Riken BRC
Category: Archaea
General microbes: JCM8864  Available Riken BRC
Category: Archaea
History : <-- M. Kamekura <-- ATCC 35960 <-- L. I. Hochstein S1.
xref ID : ATCC 35960; CGMCC 1.2198; DSM 4425; NCIMB 13115; VKM B-1754
Scientific Name : Haloferax denitrificans (Tomlinson et al. 1986) Tindall et al. 1989
Old Scientific Name : Halobacterium denitrificans
Source : Saltern in the southern portion of the San Francisco Bay
Phylogeny : https://identifiers.org/insdc:AB477163; https://identifiers.org/insdc:D14128
Medium Temp, etc : HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C
Taxonomy : Haloferax denitrificans
Reference : Zhang G, Dong X, Sun Y, Antunes A, Hikmawan T, Haroon MF, Wang J, Stingl U. (2020) <i>Haloferax profundi</i> sp. nov. and <i>Haloferax marisrubri</i> sp. nov., Isolated from the Discovery Deep Brine-Seawater Interface in the Red Sea. Microorganisms 8(10)
Enache M, Itoh T, Kamekura M, Teodosiu G, Dumitru L. (2007) Haloferax prahovense sp. nov., an extremely halophilic archaeon isolated from a Romanian salt lake. Int J Syst Evol Microbiol 57(Pt 2) 393-397
Allen MA, Goh F, Leuko S, Echigo A, Mizuki T, Usami R, Kamekura M, Neilan BA, Burns BP. (2008) Haloferax elongans sp. nov. and Haloferax mucosum sp. nov., isolated from microbial mats from Hamelin Pool, Shark Bay, Australia. Int J Syst Evol Microbiol 58(Pt 4) 798-802
General microbes: JCM8866  Available Riken BRC
Category: Archaea
History : <-- IFO 14739 <-- ATCC 33500 <-- F. Rodoriguez-Valera R-4.
xref ID : ATCC 33500; BCRC AR10047; CCM 3361; CGMCC 1.2630; CGMCC 1.3716; DSM 1411; IAM 13647; IFO 14739; NBRC 14739; NCIMB 2177; VKM B-1748
Scientific Name : Haloferax mediterranei (Rodriguez-Valera et al. 1983) Torreblanca et al. 1987
Old Scientific Name : Halobacterium mediterranei
Source : Salt pond near Alicante, Spain
Phylogeny : https://identifiers.org/insdc:AB477167; https://identifiers.org/insdc:D11107; https://identifiers.org/insdc:S39859; https://identifiers.org/insdc:S76923; https://identifiers.org/insdc:X14441
Medium Temp, etc : HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C
Taxonomy : Haloferax mediterranei
Reference : Zhang G, Dong X, Sun Y, Antunes A, Hikmawan T, Haroon MF, Wang J, Stingl U. (2020) <i>Haloferax profundi</i> sp. nov. and <i>Haloferax marisrubri</i> sp. nov., Isolated from the Discovery Deep Brine-Seawater Interface in the Red Sea. Microorganisms 8(10)
Enache M, Itoh T, Kamekura M, Teodosiu G, Dumitru L. (2007) Haloferax prahovense sp. nov., an extremely halophilic archaeon isolated from a Romanian salt lake. Int J Syst Evol Microbiol 57(Pt 2) 393-397
Allen MA, Goh F, Leuko S, Echigo A, Mizuki T, Usami R, Kamekura M, Neilan BA, Burns BP. (2008) Haloferax elongans sp. nov. and Haloferax mucosum sp. nov., isolated from microbial mats from Hamelin Pool, Shark Bay, Australia. Int J Syst Evol Microbiol 58(Pt 4) 798-802
General microbes: JCM8876  Available Riken BRC
Category: Archaea
History : <-- ATCC 17082 <-- C. B. van Niel LD3.1 <-- B. Elazari-Volcani.
xref ID : ATCC 17082; CCM 537; DSM 1307; IAM 13183; IFO 14719; NBRC 14719; NCIMB 787; VKM B-1772
Scientific Name : Halococcus morrhuae (Farlow 1880) Kocur and Hodgkiss 1973
Old Scientific Name : Micrococcus morrhuae
Source : Red Sea
Phylogeny : https://identifiers.org/insdc:AB477157; https://identifiers.org/insdc:J01865; https://identifiers.org/insdc:X00662; https://identifiers.org/insdc:X05481
Medium Temp, etc : \, HALOALKALIPHILE MEDIUM, 37C
Taxonomy : Halococcus morrhuae
Reference : Namwong S, Tanasupawat S, Visessanguan W, Kudo T, Itoh T. (2007) Halococcus thailandensis sp. nov., from fish sauce in Thailand. Int J Syst Evol Microbiol 57(Pt 10) 2199-2203
General microbes: JCM8877  Available Riken BRC
Category: Archaea
History : <-- ATCC 29715 <-- C. Gonzalez J.F.54.
xref ID : ATCC 29715; BCRC AR10046; CCM 3404; CGMCC 1.6288; DSM 3756; IAM 13180; IFO 14741; NBRC 14741; NCIMB 2082; VKM B-1791
Scientific Name : Haloarcula vallismortis (González et al. 1979) Torreblanca et al. 1986
Old Scientific Name : Halobacterium vallismortis
Source : Salt pools of the Death Valley, CA, USA
Phylogeny : https://identifiers.org/insdc:AB477148; https://identifiers.org/insdc:D50851; https://identifiers.org/insdc:EF645687; https://identifiers.org/insdc:EF645688; https://identifiers.org/insdc:U17593
Medium Temp, etc : \, HALOALKALIPHILE MEDIUM, 37C
Taxonomy : Haloarcula vallismortis
Reference : Sato Y, Kimura H. (2019) Temperature-dependent expression of different guanine-plus-cytosine content 16S rRNA genes in Haloarcula strains of the class Halobacteria. Antonie Van Leeuwenhoek 112(2) 187-201
General microbes: JCM8878  Available Riken BRC
Category: Archaea
History : <-- ATCC 49257 <-- A. Ventosa P-423.
xref ID : ATCC 49257; CCM 4147; CGMCC 1.6994; DSM 5350; NCIMB 12837; VKM B-1770
Scientific Name : Halococcus saccharolyticus Montero et al. 1990
Old Scientific Name : Halococcus saccharolyticus
Source : Ponds of saltern in San Fernando, Cáidz, Spain
Phylogeny : https://identifiers.org/insdc:AB004876; https://identifiers.org/insdc:AB477159
Medium Temp, etc : \, HALOALKALIPHILE MEDIUM, 37C
Taxonomy : Halococcus saccharolyticus
Reference : Namwong S, Tanasupawat S, Visessanguan W, Kudo T, Itoh T. (2007) Halococcus thailandensis sp. nov., from fish sauce in Thailand. Int J Syst Evol Microbiol 57(Pt 10) 2199-2203
General microbes: JCM8879  Available Riken BRC
Category: Archaea
History : <-- NCIMB 2012 <-- H. Larsen DS2.
xref ID : ATCC 29605; CCM 2852; CGMCC 1.2150; CGMCC 1.3715; DSM 3757; IAM 13648; IFO 14742; NBRC 14742; NCIMB 2012; VKM B-1768
Scientific Name : Haloferax volcanii (Mullakhanbhai and Larsen 1975) Torreblanca et al. 1986
Old Scientific Name : Halobacterium volcanii
Source : Sediment from the Dead Sea
Phylogeny : https://identifiers.org/insdc:AB477170; https://identifiers.org/insdc:K00421; https://identifiers.org/insdc:S76922; https://identifiers.org/insdc:X02127; https://identifiers.org/insdc:X02128; https://identifiers.org/insdc:X02129
Medium Temp, etc : HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C
Taxonomy : Haloferax volcanii
Reference : Zhang G, Dong X, Sun Y, Antunes A, Hikmawan T, Haroon MF, Wang J, Stingl U. (2020) <i>Haloferax profundi</i> sp. nov. and <i>Haloferax marisrubri</i> sp. nov., Isolated from the Discovery Deep Brine-Seawater Interface in the Red Sea. Microorganisms 8(10)
Enache M, Itoh T, Kamekura M, Teodosiu G, Dumitru L. (2007) Haloferax prahovense sp. nov., an extremely halophilic archaeon isolated from a Romanian salt lake. Int J Syst Evol Microbiol 57(Pt 2) 393-397
Allen MA, Goh F, Leuko S, Echigo A, Mizuki T, Usami R, Kamekura M, Neilan BA, Burns BP. (2008) Haloferax elongans sp. nov. and Haloferax mucosum sp. nov., isolated from microbial mats from Hamelin Pool, Shark Bay, Australia. Int J Syst Evol Microbiol 58(Pt 4) 798-802
General microbes: JCM8880  Available Riken BRC
Category: Archaea
History : <-- IFO 14740 <-- ATCC 33755 <-- A. Oren RD-26.
xref ID : ATCC 33755; CGMCC 1.2928; CIP 105330; DSM 3755; IFO 14740; NBRC 14740; NCIMB 2197; VKM B-1771
Scientific Name : Halorubrum sodomense (Oren 1983) McGenity and Grant 1996
Old Scientific Name : Halobacterium sodomense
Source : Surface water from the Dead Sea
Phylogeny : https://identifiers.org/insdc:AB477185; https://identifiers.org/insdc:D13379; https://identifiers.org/insdc:X82169
Medium Temp, etc : HALOBACTERIA MEDIUM, \, HALONEUTROPHILE MEDIUM, 37C
Taxonomy : Halorubrum sodomense
Reference : Mancinelli RL, Landheim R, Sánchez-Porro C, Dornmayr-Pfaffenhuemer M, Gruber C, Legat A, Ventosa A, Radax C, Ihara K, White MR, Stan-Lotter H. (2009) Halorubrum chaoviator sp. nov., a haloarchaeon isolated from sea salt in Baja California, Mexico, Western Australia and Naxos, Greece. Int J Syst Evol Microbiol 59(Pt 8) 1908-13
Pesenti PT, Sikaroodi M, Gillevet PM, Sánchez-Porro C, Ventosa A, Litchfield CD. (2008) Halorubrum californiense sp. nov., an extreme archaeal halophile isolated from a crystallizer pond at a solar salt plant in California, USA. Int J Syst Evol Microbiol 58(Pt 12) 2710-5
General microbes: JCM8911  Available Riken BRC
Category: Archaea
History : <-- IAM 13179 <-- F. Rodriguez-Valera Y27.
xref ID : ATCC 33960; CCM 3601; DSM 4426; IAM 13179; NBRC 102182; NCIMB 2187; VKM B-1755
Scientific Name : Haloarcula hispanica Juez et al. 1986
Old Scientific Name : Haloarcula hispanica
Source : Solar saltern near Alicante, Spain
Phylogeny : https://identifiers.org/insdc:AB477145; https://identifiers.org/insdc:EF645682; https://identifiers.org/insdc:EF645683
Medium Temp, etc : HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C
Taxonomy : Haloarcula hispanica
Reference : Enomoto S, Shimane Y, Ihara K, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R, Takai K, Minegishi H. (2020) <i>Haloarcula mannanilytica</i> sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt. Int J Syst Evol Microbiol 70(12) 6331-6337
Sato Y, Kimura H. (2019) Temperature-dependent expression of different guanine-plus-cytosine content 16S rRNA genes in Haloarcula strains of the class Halobacteria. Antonie Van Leeuwenhoek 112(2) 187-201
General microbes: JCM8912  Available Riken BRC
Category: Archaea
History : <-- IAM 13181 <-- U. Rdest strain GN.
xref ID : IAM 13181
Scientific Name : "Haloarcula californiae"
Old Scientific Name : Haloarcula californiae
Source : Brine from a saltern at Guerrero Negro, Baja, CA, USA
Phylogeny : https://identifiers.org/insdc:AB477144; https://identifiers.org/insdc:AB477984; https://identifiers.org/insdc:AB477985
Medium Temp, etc : HALOBACTERIA MEDIUM, HALONEUTROPHILE MEDIUM, 37C
Taxonomy : Haloarcula californiae
Reference : Sato Y, Kimura H. (2019) Temperature-dependent expression of different guanine-plus-cytosine content 16S rRNA genes in Haloarcula strains of the class Halobacteria. Antonie Van Leeuwenhoek 112(2) 187-201
General microbes: JCM8929  Available Riken BRC
Category: Archaea
History : <-- DSM 639 <-- T. D. Brock 98-3.
xref ID : ATCC 33909; DSM 639; IFO 15157; NBRC 15157; NCIMB 11770
Scientific Name : Sulfolobus acidocaldarius Brock et al. 1972
Old Scientific Name : Sulfolobus acidocaldarius
Source : Locomotive Spring in Yellowstone National Park, WY, USA
Phylogeny : https://identifiers.org/insdc:D14053; https://identifiers.org/insdc:D14876; https://identifiers.org/insdc:U05019; https://identifiers.org/insdc:U32320; https://identifiers.org/insdc:X52382
Medium Temp, etc : SULFOLOBUS MEDIUM, SULFOLOBUS MEDIUM, 70C
Taxonomy : Sulfolobus acidocaldarius
Reference : Kanno N, Kato S, Ohkuma M, Matsui M, Iwasaki W, Shigeto S. (2021) Machine learning-assisted single-cell Raman fingerprinting for <i>in situ</i> and nondestructive classification of prokaryotes. iScience 24(9) 102975
Horai S, Yamauchi N, Naraoka H. (2019) Simultaneous total analysis of core and polar membrane lipids in archaea by high-performance liquid chromatography/high-resolution mass spectrometry coupled with heated electrospray ionization. Rapid Commun Mass Spectrom 33(20) 1571-1577
DNA List 0 items
Associated Resource is not found.