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Reference Related Resource Count : 25,573

Associated Resources List

664 items
Strain   664 items Go to list of Strain
DNA   0 items
Organism strain
Rice Wild 595 Go to list
Landrace, Wild Strains 42 Go to list
Mutant lines(KYUSHU Collection) 12 Go to list
Gene preservation lines 1 Go to list
Recombination self-fertilizing lines 2 Go to list
Associate Isogenic Marker lines 4 Go to list
Marker gene testers 3 Go to list
Chromosomal partial replacement lines 5 Go to list
Organism DNA
Associated Resource is not found.
Strain List 664 items 1 - 20 / 664
Rice: W0019  Available National Institute of GENETICS
Category: Wild
Rice: W0048  Available National Institute of GENETICS
Category: Wild
Rice: W0107  Available National Institute of GENETICS
Category: Wild
Core collection rank : 3
Species : O. rufipogon
Genome : AA
Taxonomy : Oryza
Reference : Shimizu-Sato S, Tsuda K, Nosaka-Takahashi M, Suzuki T, Ono S, Ta KN, Yoshida Y, Nonomura KI, Sato Y. (2020) Agrobacterium-Mediated Genetic Transformation of Wild Oryza Species Using Immature Embryos. Rice (N Y) 13(1) 33
Yoshiki Tokuyama, Yohei Koide, Kazumitsu Onishi, Kiwamu Hikichi, Miku Omachi, Itsuro Takamure, Yuji Kishima (2021) The mechanical origin of the radial shape in distichous phyllotaxy grass plants in silico Plants 3
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T. (2009) Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure. Plant J 60(5) 805-19
Kobayashi S, Noro Y, Nagano H, Yoshida KT, Takano-Shimizu T, Kishima Y, Sano Y. (2005) Evidence for an evolutionary force that prevents epigenetic silencing between tail-to-tail rice genes with a short spacer. Gene 346 231-40
Nagano H, Onishi K, Ogasawara M, Horiuchi Y, Sano Y. (2005) Genealogy of the "Green Revolution" gene in rice. Genes Genet Syst 80(5) 351-6
Takagi K, Nagano H, Kishima Y, Sano Y (2003) MITE-transposon Display Efficiently Detects Polymorphisms among the Oryza AA-genome Species Breed Sci. 53 125-132
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E. (2002) Evolutionary relationships among rice species with AA genome based on SINE insertion analysis. Genes Genet Syst 77(5) 323-34
Chung MC, Lee YI, Cheng YY, Chou YJ, Lu CF. (2008) Chromosomal polymorphism of ribosomal genes in the genus Oryza. Theor Appl Genet 116(6) 745-53
Teranishi C, Yoshida K, Miyashita NT. (2008) DNA polymorphism in the supERWOMAN1 (SPW1) locus of the wild rice Oryza rufipogon and its related species. Genes Genet Syst 83(5) 403-15
Takata M, Kishima Y, Sano Y. (2005) DNA Methylation Polymorphisms in Rice and Wild Rice Strains: Detection of Epigenetic Markers Breed Sci. 55 57-63
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H. (2005) Two new SINE elements, p-SINE2 and p-SINE3, from rice. Genes Genet Syst 80(3) 161-71
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M. (2011) Artificial selection for a green revolution gene during japonica rice domestication. Proc Natl Acad Sci U S A 108(27) 11034-9
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R. (2015) Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza. Genes Genet Syst 90(5) 269-81
Rice: W0610  Available National Institute of GENETICS
Category: Wild
Core collection rank : 3
Species : O. rufipogon
Genome : AA
Taxonomy : Oryza
Reference : Kariya K, Murata K, Kokubo Y, Ube N, Ueno K, Yabuta Y, Teraishi M, Okumoto Y, Mori N, Ishihara A. (2019) Variation of diterpenoid phytoalexin oryzalexin A production in cultivated and wild rice. Phytochemistry 166 112057
Murata K, Kitano T, Yoshimoto R, Takata R, Ube N, Ueno K, Ueno M, Yabuta Y, Teraishi M, Holland CK, Jander G, Okumoto Y, Mori N, Ishihara A. (2020) Natural variation in the expression and catalytic activity of a naringenin 7-O-methyltransferase influences antifungal defenses in diverse rice cultivars. Plant J 101(5) 1103-1117
Kariya K, Ube N, Ueno M, Teraishi M, Okumoto Y, Mori N, Ueno K, Ishihara A. (2020) Natural variation of diterpenoid phytoalexins in cultivated and wild rice species. Phytochemistry 180 112518
Ishikawa R, Castillo CC, Htun TM, Numaguchi K, Inoue K, Oka Y, Ogasawara M, Sugiyama S, Takama N, Orn C, Inoue C, Nonomura KI, Allaby R, Fuller DQ, Ishii T. (2022) A stepwise route to domesticate rice by controlling seed shattering and panicle shape. Proc Natl Acad Sci U S A 119(26) e2121692119
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T. (2009) Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure. Plant J 60(5) 805-19
Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T, Yano M. (2010) Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Proc Natl Acad Sci U S A 107(13) 5792-7
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N. (2016) Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice. Mol Plant 9(2) 221-232
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
Xu JH, Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E. (2007) Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs. Genes Genet Syst 82(3) 217-29
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H. (2005) Two new SINE elements, p-SINE2 and p-SINE3, from rice. Genes Genet Syst 80(3) 161-71
Mizuta Y, Harushima Y, Kurata N. (2010) Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes. Proc Natl Acad Sci U S A 107(47) 20417-22
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N. (2010) Diversity of panicle branching patterns in wild relatives of rice. Breed Sci. 60(5) 586-596
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M. (2011) Artificial selection for a green revolution gene during japonica rice domestication. Proc Natl Acad Sci U S A 108(27) 11034-9
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R. (2015) Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza. Genes Genet Syst 90(5) 269-81
Rice: W1296  Available National Institute of GENETICS
Category: Wild
Rice: W1542  Available National Institute of GENETICS
Category: Wild
Rice: W1549  Available National Institute of GENETICS
Category: Wild
Rice: W1716  Available National Institute of GENETICS
Category: Wild
Rice: W1718  Available National Institute of GENETICS
Category: Wild
Rice: W1719  Available National Institute of GENETICS
Category: Wild
Rice: W0022  Available National Institute of GENETICS
Category: Wild
Rice: W1560  Available National Institute of GENETICS
Category: Wild
Rice: W1721  Available National Institute of GENETICS
Category: Wild
Rice: W1723  Available National Institute of GENETICS
Category: Wild
Rice: W1724  Available National Institute of GENETICS
Category: Wild
Rice: W2099  Available National Institute of GENETICS
Category: Wild
Rice: W2025  Available National Institute of GENETICS
Category: Wild
Rice: W2036  Available National Institute of GENETICS
Category: Wild
Rice: W2055  Available National Institute of GENETICS
Category: Wild
Rice: W0012  Available National Institute of GENETICS
Category: Wild
DNA List 0 items
Associated Resource is not found.