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Resource Information Acc. No. : W0610

Resource Information
Organism Rice
strain or clone Strain
Category Wild
Resource name W0610
Availability Available
Features
Core collection rank : 3
Species : O. rufipogon
Genome : AA
Taxonomy : Oryza
Reference : Kariya K, Murata K, Kokubo Y, Ube N, Ueno K, Yabuta Y, Teraishi M, Okumoto Y, Mori N, Ishihara A. (2019) Variation of diterpenoid phytoalexin oryzalexin A production in cultivated and wild rice. Phytochemistry 166 112057
Murata K, Kitano T, Yoshimoto R, Takata R, Ube N, Ueno K, Ueno M, Yabuta Y, Teraishi M, Holland CK, Jander G, Okumoto Y, Mori N, Ishihara A. (2020) Natural variation in the expression and catalytic activity of a naringenin 7-O-methyltransferase influences antifungal defenses in diverse rice cultivars. Plant J 101(5) 1103-1117
Kariya K, Ube N, Ueno M, Teraishi M, Okumoto Y, Mori N, Ueno K, Ishihara A. (2020) Natural variation of diterpenoid phytoalexins in cultivated and wild rice species. Phytochemistry 180 112518
Ishikawa R, Castillo CC, Htun TM, Numaguchi K, Inoue K, Oka Y, Ogasawara M, Sugiyama S, Takama N, Orn C, Inoue C, Nonomura KI, Allaby R, Fuller DQ, Ishii T. (2022) A stepwise route to domesticate rice by controlling seed shattering and panicle shape. Proc Natl Acad Sci U S A 119(26) e2121692119
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T. (2009) Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure. Plant J 60(5) 805-19
Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T, Yano M. (2010) Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Proc Natl Acad Sci U S A 107(13) 5792-7
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N. (2016) Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice. Mol Plant 9(2) 221-232
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
Xu JH, Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E. (2007) Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs. Genes Genet Syst 82(3) 217-29
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H. (2005) Two new SINE elements, p-SINE2 and p-SINE3, from rice. Genes Genet Syst 80(3) 161-71
Mizuta Y, Harushima Y, Kurata N. (2010) Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes. Proc Natl Acad Sci U S A 107(47) 20417-22
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N. (2010) Diversity of panicle branching patterns in wild relatives of rice. Breed Sci. 60(5) 586-596
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M. (2011) Artificial selection for a green revolution gene during japonica rice domestication. Proc Natl Acad Sci U S A 108(27) 11034-9
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R. (2015) Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza. Genes Genet Syst 90(5) 269-81
Resouce detail information
(request form)
http://shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/133

Distributors information
Organization Plant Genetics Laboratory, Department of Genomics and Evolutionary Biology. National Institute of Genetics
Person in charge SATO Yutaka
Postal Code 411-8540
Address Yata 1111. Mishima. Shizuoka. JAPAN
Phone 055-981-6712
FAX 055-981-6715
E-mail yusato@nig.ac.jp
URL http://www.nig.ac.jp/
Other information