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Resource count: 6,592,432

Resource Information Acc. No. : W0107

Resource Information
Organism Rice
strain or clone Strain
Category Wild
Resource name W0107
Availability Available
Features
Core collection rank : 3
Species : O. rufipogon
Genome : AA
Taxonomy : Oryza
Reference : Shimizu-Sato S, Tsuda K, Nosaka-Takahashi M, Suzuki T, Ono S, Ta KN, Yoshida Y, Nonomura KI, Sato Y. (2020) Agrobacterium-Mediated Genetic Transformation of Wild Oryza Species Using Immature Embryos. Rice (N Y) 13(1) 33
Yoshiki Tokuyama, Yohei Koide, Kazumitsu Onishi, Kiwamu Hikichi, Miku Omachi, Itsuro Takamure, Yuji Kishima (2021) The mechanical origin of the radial shape in distichous phyllotaxy grass plants in silico Plants 3
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T. (2009) Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure. Plant J 60(5) 805-19
Kobayashi S, Noro Y, Nagano H, Yoshida KT, Takano-Shimizu T, Kishima Y, Sano Y. (2005) Evidence for an evolutionary force that prevents epigenetic silencing between tail-to-tail rice genes with a short spacer. Gene 346 231-40
Nagano H, Onishi K, Ogasawara M, Horiuchi Y, Sano Y. (2005) Genealogy of the "Green Revolution" gene in rice. Genes Genet Syst 80(5) 351-6
Takagi K, Nagano H, Kishima Y, Sano Y (2003) MITE-transposon Display Efficiently Detects Polymorphisms among the Oryza AA-genome Species Breed Sci. 53 125-132
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E. (2002) Evolutionary relationships among rice species with AA genome based on SINE insertion analysis. Genes Genet Syst 77(5) 323-34
Chung MC, Lee YI, Cheng YY, Chou YJ, Lu CF. (2008) Chromosomal polymorphism of ribosomal genes in the genus Oryza. Theor Appl Genet 116(6) 745-53
Teranishi C, Yoshida K, Miyashita NT. (2008) DNA polymorphism in the supERWOMAN1 (SPW1) locus of the wild rice Oryza rufipogon and its related species. Genes Genet Syst 83(5) 403-15
Takata M, Kishima Y, Sano Y. (2005) DNA Methylation Polymorphisms in Rice and Wild Rice Strains: Detection of Epigenetic Markers Breed Sci. 55 57-63
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H. (2005) Two new SINE elements, p-SINE2 and p-SINE3, from rice. Genes Genet Syst 80(3) 161-71
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M. (2011) Artificial selection for a green revolution gene during japonica rice domestication. Proc Natl Acad Sci U S A 108(27) 11034-9
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R. (2015) Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza. Genes Genet Syst 90(5) 269-81
Resouce detail information
(request form)
http://shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/125

Distributors information
Organization Plant Genetics Laboratory, Department of Genomics and Evolutionary Biology. National Institute of Genetics
Person in charge SATO Yutaka
Postal Code 411-8540
Address Yata 1111. Mishima. Shizuoka. JAPAN
Phone 055-981-6712
FAX 055-981-6715
E-mail yusato@nig.ac.jp
URL http://www.nig.ac.jp/
Other information