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All Organisms
Mouse
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Medakafish
Xenopus
C. elegans
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Zebrafish
Arabidopsis(Plant cells, Gene)
Barley
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Wheat
Morning Glory
Chrysanthemum
Algae
Lotus
Glycine
E. coli
Yeast
Pathogenic Microorganisms
Macaca fuscata
Animal / Human cells
Embryonic stem cell
other bacteria
Virus
Bacillus subtilis
Cellular slime molds
Tomato
Ciona Intestinalis
General Microbes
Oxycomanthus japonicus
Chicken
Quail
Paramecium
DNA material
All
You can use
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Tabs(ALL, DNA, BLAST, GO, Taxonomy, DO, Reference) are clickable.
Sequence count : 4,783,187
Program
blastn (DNA query vs. DNA database)
tblastx (DNA query[translated into protein] vs. DNA database[translated into protein])
tblastn (Protein query vs. DNA database[translated into protein])
COPY & PASTE:
Options for BLAST Search
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Query Genetic Codes
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Expect
Frame shift penalty
for blastx
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Other options:
Options for BLASTScope
Sort Hits order by :
Hit Number
bit score
query from
definition
alignment length
Number of Hits :
All Hits
Limit :
Hits
Number of HSPs :
All HSPs
Limit :
HSPs
Limit results by alignment length :
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Limit results by range of query sequence :
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BioResource Databases (All clones are available)
ALL
EST/cDNA
Mouse
( 78,174 )
NIA Mouse 7.4K and NIA/NIH Mouse 15K cDNA clones
1-cell Unfertilized Egg
1-cell Fertilized Egg
2-cell Embryo
4-cell Embryo
8-cell Embryo
16-cell Embryo
3.5-dpc Blastocyst
HMI/Ms cDNA
KJR/Ms cDNA
MSM/Ms cDNA
PGN2/Ms cDNA
Drosophila
( 190,096 )
auraria adult cDNA clone
sechellia adult cDNA clone
simulans adult cDNA clone
simulans larvae cDNA clone
C. elegans
Silkworm
( 20,635 )
bmmt
bmnc
bmov
bmte
fcaL
fmgV
fner
Medakafish
( 228,014 )
Adult male Liver cDNA clone
ST22 Embryo cDNA clone
ST35 Embryo cDNA clone
ST40 Fry cDNA clone
Adult Brain cDNA clone
Adult female Ovary cDNA clone
Adult males Testis
Gill
Kidney
Female liver
Spleen
Liver library
Female whole body library
Fry full-length library
Fry library
Embryo library
adult male and female whole body
cultured cell
cultured cell with 20J/m2 UV ± PR
Ovary
Liver from male and female
cultured cell with γ-irrdiation
7 day embryos
Fry just after hatching
Adult ovary
Fry 5 day old after hatching
Fry 10 day old after hatching
Fry 15 day old after hatching
241920 entries
Oxycomanthus japonicus
Xenopus
( 370,069 )
X.tropicalis/embryo
X.lavis/anterior neroectoderm
X.lavis/Keller explants
X.laevis/anterior endomesoderm
X.laevis/wholeembryo(stage 25)
X.laevis/wholeembryo(stage 10.5)
Arabidopsis(Plant cells, Gene)
( 625,394 )
Arabidopsis cDNA clones
Physcomitrella patens cDNA clones
Poplar cDNA clones
Tobacco ESTs
many plants cDNA
Cassava full-length cDNA clones
T. halophila full-length cDNA clones
B. rapa full-length cDNA clones
Striga hermonthica full-length cDNA clones
Brachypodium distachyon full-length cDNA
Wheat
( 562,707 )
ESTs
Barley
( 139,933 )
Haruna Nijo, germination, shoots ESTs
Haruna Nijo, second leaf stage, seedling leaves ESTs
Haruna Nijo, adult or heading stage, top three leaves ESTs
Akashinriki, vegetative stage, leaves ESTs
H602, adult or heading stage, top three leaves ESTs
Haruna Nijo, Seedling, Shoot ESTs
Haruna Nijo, Germination, Root ESTs
Haruna Nijo, Germination, Shoot ESTs
Haruna Nijo full-length cDNA
Morning Glory
( 62,235 )
ESTs
flower and bud mix
old seedling
Lotus
( 185,293 )
cDNA clones
LjFLcDNA clones
Glycine
( 73,373 )
full-length cDNA clone
Tomato
( 59,690 )
Fruit / maturing fruits ESTs
Fruit / IMG, MG, Orange, Red stages ESTs
Leaf / pathogen-treated ESTs
Roots of tomato with/without flower, Fusarium-treated root
Cellular slime molds
( 5,499 )
cDNA
E. coli
Yeast
( 101,079 )
Full length cDNA library
Animal / Human cells
DNA material
Genomic DNA
Mouse
( 468,975 )
MSM/Ms Mouse BAC clone
B6N Mouse BAC clone
Rat
( 558,758 )
Rattus norvegicus F344/Stm
Rattus norvegicus LE/Stm
Drosophila
( 72,127 )
ananassae
auraria
melanogaster
sechellia
simulans
Medakafish
( 551,547 )
BAC clone
Fosmid clone
Macaca fuscata
( 167,159 )
BAC clone
Xenopus
Lotus
( 46,569 )
BAC clones
TAC clones
Mesorhizobium plasmid clone
Glycine
( 8,622 )
Bradyrhizobium BAC clone
Bradyrhizobium cosmid clone
Tomato
( 93,682 )
BAC Clone derived from Micro-Tom
Yeast
( 113,551 )
Fission yeast genomic DNA clone
Virus
Animal / Human cells
other bacteria
National BioResource Project
Contact us
Tabs(ALL, DNA, BLAST, GO, Taxonomy, DO, Reference) are clickable.
