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Category: 野生イネ系統
| コアコレクションランク : |
2 |
| 種名 : |
O. latifolia |
| ゲノム : |
CCDD |
| Taxonomy : |
Oryza
|
| リファレンス : |
Khan N, Katsube-Tanaka T, Iida S, Yamaguchi T, Nakano J, Tsujimoto H. (2008) Diversity of rice glutelin polypeptides in wild species assessed by the higher-temperature sodium dodecyl sulfate-polyacrylamide gel electrophoresis and subunit-specific antibodies. Electrophoresis 29(6) 1308-16
Khan N, Katsube-Tanaka T, Iida S, Yamaguchi T, Nakano J, Tsujimoto H. (2008) Identification and variation of glutelin alpha polypeptides in the genus Oryza assessed by two-dimensional electrophoresis and step-by-step immunodetection. J Agric Food Chem 56(13) 4955-61
Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K. (2013) Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza. Breed Sci 63(3) 246-54
Chung MC, Lee YI, Cheng YY, Chou YJ, Lu CF. (2008) Chromosomal polymorphism of ribosomal genes in the genus Oryza. Theor Appl Genet 116(6) 745-53
|
Category: 野生イネ系統
Category: 野生イネ系統
| コアコレクションランク : |
3 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Shimizu-Sato S, Tsuda K, Nosaka-Takahashi M, Suzuki T, Ono S, Ta KN, Yoshida Y, Nonomura KI, Sato Y. (2020) Agrobacterium-Mediated Genetic Transformation of Wild Oryza Species Using Immature Embryos. Rice (N Y) 13(1) 33
Yoshiki Tokuyama, Yohei Koide, Kazumitsu Onishi, Kiwamu Hikichi, Miku Omachi, Itsuro Takamure, Yuji Kishima (2021) The mechanical origin of the radial shape in distichous phyllotaxy grass plants in silico Plants 3
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T. (2009) Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure. Plant J 60(5) 805-19
Kobayashi S, Noro Y, Nagano H, Yoshida KT, Takano-Shimizu T, Kishima Y, Sano Y. (2005) Evidence for an evolutionary force that prevents epigenetic silencing between tail-to-tail rice genes with a short spacer. Gene 346 231-40
Nagano H, Onishi K, Ogasawara M, Horiuchi Y, Sano Y. (2005) Genealogy of the "Green Revolution" gene in rice. Genes Genet Syst 80(5) 351-6
Takagi K, Nagano H, Kishima Y, Sano Y (2003) MITE-transposon Display Efficiently Detects Polymorphisms among the Oryza AA-genome Species Breed Sci. 53 125-132
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E. (2002) Evolutionary relationships among rice species with AA genome based on SINE insertion analysis. Genes Genet Syst 77(5) 323-34
Chung MC, Lee YI, Cheng YY, Chou YJ, Lu CF. (2008) Chromosomal polymorphism of ribosomal genes in the genus Oryza. Theor Appl Genet 116(6) 745-53
Teranishi C, Yoshida K, Miyashita NT. (2008) DNA polymorphism in the supERWOMAN1 (SPW1) locus of the wild rice Oryza rufipogon and its related species. Genes Genet Syst 83(5) 403-15
Takata M, Kishima Y, Sano Y. (2005) DNA Methylation Polymorphisms in Rice and Wild Rice Strains: Detection of Epigenetic Markers Breed Sci. 55 57-63
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H. (2005) Two new SINE elements, p-SINE2 and p-SINE3, from rice. Genes Genet Syst 80(3) 161-71
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M. (2011) Artificial selection for a green revolution gene during japonica rice domestication. Proc Natl Acad Sci U S A 108(27) 11034-9
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R. (2015) Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza. Genes Genet Syst 90(5) 269-81
|
Category: 野生イネ系統
| コアコレクションランク : |
3 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Kariya K, Murata K, Kokubo Y, Ube N, Ueno K, Yabuta Y, Teraishi M, Okumoto Y, Mori N, Ishihara A. (2019) Variation of diterpenoid phytoalexin oryzalexin A production in cultivated and wild rice. Phytochemistry 166 112057
Murata K, Kitano T, Yoshimoto R, Takata R, Ube N, Ueno K, Ueno M, Yabuta Y, Teraishi M, Holland CK, Jander G, Okumoto Y, Mori N, Ishihara A. (2020) Natural variation in the expression and catalytic activity of a naringenin 7-O-methyltransferase influences antifungal defenses in diverse rice cultivars. Plant J 101(5) 1103-1117
Kariya K, Ube N, Ueno M, Teraishi M, Okumoto Y, Mori N, Ueno K, Ishihara A. (2020) Natural variation of diterpenoid phytoalexins in cultivated and wild rice species. Phytochemistry 180 112518
Ishikawa R, Castillo CC, Htun TM, Numaguchi K, Inoue K, Oka Y, Ogasawara M, Sugiyama S, Takama N, Orn C, Inoue C, Nonomura KI, Allaby R, Fuller DQ, Ishii T. (2022) A stepwise route to domesticate rice by controlling seed shattering and panicle shape. Proc Natl Acad Sci U S A 119(26) e2121692119
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T. (2009) Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure. Plant J 60(5) 805-19
Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T, Yano M. (2010) Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Proc Natl Acad Sci U S A 107(13) 5792-7
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N. (2016) Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice. Mol Plant 9(2) 221-232
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
Xu JH, Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E. (2007) Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs. Genes Genet Syst 82(3) 217-29
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H. (2005) Two new SINE elements, p-SINE2 and p-SINE3, from rice. Genes Genet Syst 80(3) 161-71
Mizuta Y, Harushima Y, Kurata N. (2010) Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes. Proc Natl Acad Sci U S A 107(47) 20417-22
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N. (2010) Diversity of panicle branching patterns in wild relatives of rice. Breed Sci. 60(5) 586-596
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M. (2011) Artificial selection for a green revolution gene during japonica rice domestication. Proc Natl Acad Sci U S A 108(27) 11034-9
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R. (2015) Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza. Genes Genet Syst 90(5) 269-81
|
Category: 野生イネ系統
| コアコレクションランク : |
3 |
| 種名 : |
O. australiensis |
| ゲノム : |
EE |
| Taxonomy : |
Oryza
|
| リファレンス : |
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T. (2009) Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure. Plant J 60(5) 805-19
Takahashi H, Sato YI, Nakamura I. (2008) Evolutionary analysis of two plastid DNA sequences in cultivated and wild species of Oryza Breed Sci. 58 225-233
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Khan N, Katsube-Tanaka T, Iida S, Yamaguchi T, Nakano J, Tsujimoto H. (2008) Diversity of rice glutelin polypeptides in wild species assessed by the higher-temperature sodium dodecyl sulfate-polyacrylamide gel electrophoresis and subunit-specific antibodies. Electrophoresis 29(6) 1308-16
Khan N, Katsube-Tanaka T, Iida S, Yamaguchi T, Nakano J, Tsujimoto H. (2008) Identification and variation of glutelin alpha polypeptides in the genus Oryza assessed by two-dimensional electrophoresis and step-by-step immunodetection. J Agric Food Chem 56(13) 4955-61
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Nagano H, Onishi K, Ogasawara M, Horiuchi Y, Sano Y. (2005) Genealogy of the "Green Revolution" gene in rice. Genes Genet Syst 80(5) 351-6
Takagi K, Nagano H, Kishima Y, Sano Y (2003) MITE-transposon Display Efficiently Detects Polymorphisms among the Oryza AA-genome Species Breed Sci. 53 125-132
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Wu Y, Zhao S, Li X, Zhang B, Jiang L, Tang Y, Zhao J, Ma X, Cai H, Sun C, Tan L. (2018) Deletions linked to PROG1 gene participate in plant architecture domestication in Asian and African rice. Nat Commun 9(1) 4157
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N. (2016) Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice. Mol Plant 9(2) 221-232
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Xu JH, Kurata N, Akimoto M, Ohtsubo H, Ohtsubo E. (2005) Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism. Genes Genet Syst 80(2) 129-34
Nishikawa T, Vaughan DA, Kadowaki K. (2005) Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes. Theor Appl Genet 110(4) 696-705
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
| コアコレクションランク : |
4 |
| 種名 : |
O. rufipogon |
| ゲノム : |
AA |
| Taxonomy : |
Oryza
|
| リファレンス : |
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490(7421) 497-501
|
Category: 野生イネ系統
|
分譲可
