Tabs(ALL, DNA, BLAST, GO, Taxonomy, DO, Reference) are clickable.
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Reference Related Resource Count :
33,482
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Reference Detail
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| Author |
Zamanian M, Cook DE, Zdraljevic S, Brady SC, Lee D, Lee J, Andersen EC. |
| Reference |
Discovery of genomic intervals that underlie nematode responses to benzimidazoles. |
| Journal |
PLoS Negl Trop Dis |
| Volume |
12(3) |
| Page |
e0006368 |
| Year Published |
2018 |
| Pubmed ID |
29601575
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Related Resource Count
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4 items
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| Organism |
strain |
C. elegans
|
Mutants (Isolated) |
4 |
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| Organism |
DNA |
| Associated Resource is not found. |
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C. elegans:
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tm234
|
 Available
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TWMU
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Category: Mutants (Isolated)
| Allele : |
tm234 |
| Gene name, cosmid : |
C54C6.2 |
| Gene name, 3-letter : |
ben-1 |
| Taxonomy : |
Caenorhabditis elegans
|
| Reference : |
Gengyo-Ando K, Mitani S. (2000) Characterization of mutations induced by ethyl methanesulfonate, UV, and trimethylpsoralen in the nematode Caenorhabditis elegans. Biochem Biophys Res Commun 269(1) 64-9
Kage-Nakadai E, Imae R, Suehiro Y, Yoshina S, Hori S, Mitani S. (2014) A conditional knockout toolkit for Caenorhabditis elegans based on the Cre/loxP recombination. PLoS One 9(12) e114680
Kage-Nakadai E, Kobuna H, Funatsu O, Otori M, Gengyo-Ando K, Yoshina S, Hori S, Mitani S. (2012) Single/low-copy integration of transgenes in Caenorhabditis elegans using an ultraviolet trimethylpsoralen method. BMC Biotechnol 12 1
Kage-Nakadai E, Imae R, Yoshina S, Mitani S. (2014) Methods for single/low-copy integration by ultraviolet and trimethylpsoralen treatment in Caenorhabditis elegans. Methods 68(3) 397-402
Zamanian M, Cook DE, Zdraljevic S, Brady SC, Lee D, Lee J, Andersen EC. (2018) Discovery of genomic intervals that underlie nematode responses to benzimidazoles. PLoS Negl Trop Dis 12(3) e0006368
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C. elegans:
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tm1155
|
Available
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TWMU
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Category: Mutants (Isolated)
| Allele : |
tm1155 |
| Gene name, cosmid : |
T22B3.2 |
| Gene name, 3-letter : |
alg-3 |
| Taxonomy : |
Caenorhabditis elegans
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| Reference : |
Phillips CM, Brown KC, Montgomery BE, Ruvkun G, Montgomery TA. (2015) piRNAs and piRNA-Dependent siRNAs Protect Conserved and Essential C. elegans Genes from Misrouting into the RNAi Pathway. Dev Cell 34(4) 457-65
Nguyen DAH, Phillips CM. (2021) Arginine methylation promotes siRNA-binding specificity for a spermatogenesis-specific isoform of the Argonaute protein CSR-1. Nat Commun 12(1) 4212
Sang Y, Ren J, Aballay A. (2022) The transcription factor HLH-26 controls probiotic-mediated protection against intestinal infection through up-regulation of the Wnt/BAR-1 pathway. PLoS Biol 20(3) e3001581
Toker IA, Lev I, Mor Y, Gurevich Y, Fisher D, Houri-Zeevi L, Antonova O, Doron H, Anava S, Gingold H, Hadany L, Shaham S, Rechavi O. (2022) Transgenerational inheritance of sexual attractiveness via small RNAs enhances evolvability in C. elegans. Dev Cell 57(3) 298-309.e9
Han T, Manoharan AP, Harkins TT, Bouffard P, Fitzpatrick C, Chu DS, Thierry-Mieg D, Thierry-Mieg J, Kim JK. (2009) 26G endo-siRNAs regulate spermatogenic and zygotic gene expression in Caenorhabditis elegans. Proc Natl Acad Sci U S A 106(44) 18674-9
Campbell AC, Updike DL. (2015) CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline. Development 142(10) 1745-55
Zamanian M, Cook DE, Zdraljevic S, Brady SC, Lee D, Lee J, Andersen EC. (2018) Discovery of genomic intervals that underlie nematode responses to benzimidazoles. PLoS Negl Trop Dis 12(3) e0006368
Conine CC, Moresco JJ, Gu W, Shirayama M, Conte D Jr, Yates JR 3rd, Mello CC. (2013) Argonautes promote male fertility and provide a paternal memory of germline gene expression in C. elegans. Cell 155(7) 1532-44
Conine CC, Batista PJ, Gu W, Claycomb JM, Chaves DA, Shirayama M, Mello CC. (2010) Argonautes ALG-3 and ALG-4 are required for spermatogenesis-specific 26G-RNAs and thermotolerant sperm in Caenorhabditis elegans. Proc Natl Acad Sci U S A 107(8) 3588-93
Almeida MV, Dietz S, Redl S, Karaulanov E, Hildebrandt A, Renz C, Ulrich HD, König J, Butter F, Ketting RF. (2018) GTSF-1 is required for formation of a functional RNA-dependent RNA Polymerase complex in <i>Caenorhabditis elegans</i>. EMBO J 37(12)
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C. elegans:
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tm1184
|
Available
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TWMU
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Category: Mutants (Isolated)
| Allele : |
tm1184 |
| Gene name, cosmid : |
ZK757.3 |
| Gene name, 3-letter : |
alg-4 |
| Taxonomy : |
Caenorhabditis elegans
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| Reference : |
Han T, Manoharan AP, Harkins TT, Bouffard P, Fitzpatrick C, Chu DS, Thierry-Mieg D, Thierry-Mieg J, Kim JK. (2009) 26G endo-siRNAs regulate spermatogenic and zygotic gene expression in Caenorhabditis elegans. Proc Natl Acad Sci U S A 106(44) 18674-9
Zamanian M, Cook DE, Zdraljevic S, Brady SC, Lee D, Lee J, Andersen EC. (2018) Discovery of genomic intervals that underlie nematode responses to benzimidazoles. PLoS Negl Trop Dis 12(3) e0006368
Conine CC, Batista PJ, Gu W, Claycomb JM, Chaves DA, Shirayama M, Mello CC. (2010) Argonautes ALG-3 and ALG-4 are required for spermatogenesis-specific 26G-RNAs and thermotolerant sperm in Caenorhabditis elegans. Proc Natl Acad Sci U S A 107(8) 3588-93
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C. elegans:
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tm1860
|
Available
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TWMU
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Category: Mutants (Isolated)
| Allele : |
tm1860 |
| Gene name, cosmid : |
R09A1.1 |
| Gene name, 3-letter : |
ergo-1 |
| Taxonomy : |
Caenorhabditis elegans
|
| Reference : |
Rogers AK, Phillips CM. (2020) A Small-RNA-Mediated Feedback Loop Maintains Proper Levels of 22G-RNAs in C. elegans. Cell Rep 33(3) 108279
Palominos MF, Verdugo L, Gabaldon C, Pollak B, Ortíz-Severín J, Varas MA, Chávez FP, Calixto A. (2017) Transgenerational Diapause as an Avoidance Strategy against Bacterial Pathogens in <i>Caenorhabditis elegans</i>. mBio 8(5)
Greer EL, Becker B, Latza C, Antebi A, Shi Y. (2016) Mutation of C. elegans demethylase spr-5 extends transgenerational longevity. Cell Res 26(2) 229-38
Posner R, Toker IA, Antonova O, Star E, Anava S, Azmon E, Hendricks M, Bracha S, Gingold H, Rechavi O. (2019) Neuronal Small RNAs Control Behavior Transgenerationally. Cell 177(7) 1814-1826.e15
Lu R, Yigit E, Li WX, Ding SW. (2009) An RIG-I-Like RNA helicase mediates antiviral RNAi downstream of viral siRNA biogenesis in Caenorhabditis elegans. PLoS Pathog 5(2) e1000286
Han T, Manoharan AP, Harkins TT, Bouffard P, Fitzpatrick C, Chu DS, Thierry-Mieg D, Thierry-Mieg J, Kim JK. (2009) 26G endo-siRNAs regulate spermatogenic and zygotic gene expression in Caenorhabditis elegans. Proc Natl Acad Sci U S A 106(44) 18674-9
Billi AC, Alessi AF, Khivansara V, Han T, Freeberg M, Mitani S, Kim JK. (2012) The Caenorhabditis elegans HEN1 ortholog, HENN-1, methylates and stabilizes select subclasses of germline small RNAs. PLoS Genet 8(4) e1002617
Vasale JJ, Gu W, Thivierge C, Batista PJ, Claycomb JM, Youngman EM, Duchaine TF, Mello CC, Conte D Jr. (2010) Sequential rounds of RNA-dependent RNA transcription drive endogenous small-RNA biogenesis in the ERGO-1/Argonaute pathway. Proc Natl Acad Sci U S A 107(8) 3582-7
Von Stetina SE, Mango SE. (2015) PAR-6, but not E-cadherin and β-integrin, is necessary for epithelial polarization in C. elegans. Dev Biol 403(1) 5-14
Dennis S, Sheth U, Feldman JL, English KA, Priess JR. (2012) C. elegans germ cells show temperature and age-dependent expression of Cer1, a Gypsy/Ty3-related retrotransposon. PLoS Pathog 8(3) e1002591
Fischer SE, Montgomery TA, Zhang C, Fahlgren N, Breen PC, Hwang A, Sullivan CM, Carrington JC, Ruvkun G. (2011) The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications. PLoS Genet 7(11) e1002369
Massirer KB, Perez SG, Mondol V, Pasquinelli AE. (2012) The miR-35-41 family of microRNAs regulates RNAi sensitivity in Caenorhabditis elegans. PLoS Genet 8(3) e1002536
Hall SE, Chirn GW, Lau NC, Sengupta P. (2013) RNAi pathways contribute to developmental history-dependent phenotypic plasticity in C. elegans. RNA 19(3) 306-19
Zamanian M, Cook DE, Zdraljevic S, Brady SC, Lee D, Lee J, Andersen EC. (2018) Discovery of genomic intervals that underlie nematode responses to benzimidazoles. PLoS Negl Trop Dis 12(3) e0006368
Kadekar P, Roy R. (2019) AMPK regulates germline stem cell quiescence and integrity through an endogenous small RNA pathway. PLoS Biol 17(6) e3000309
Svendsen JM, Reed KJ, Vijayasarathy T, Montgomery BE, Tucci RM, Brown KC, Marks TN, Nguyen DAH, Phillips CM, Montgomery TA. (2019) henn-1/HEN1 Promotes Germline Immortality in Caenorhabditis elegans. Cell Rep 29(10) 3187-3199.e4
Yigit E, Batista PJ, Bei Y, Pang KM, Chen CC, Tolia NH, Joshua-Tor L, Mitani S, Simard MJ, Mello CC. (2006) Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi. Cell 127(4) 747-57
Mets DG, Meyer BJ. (2009) Condensins regulate meiotic DNA break distribution, thus crossover frequency, by controlling chromosome structure. Cell 139(1) 73-86
Pavelec DM, Lachowiec J, Duchaine TF, Smith HE, Kennedy S. (2009) Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans. Genetics 183(4) 1283-95
Kennedy LM, Grishok A. (2014) Neuronal migration is regulated by endogenous RNAi and chromatin-binding factor ZFP-1/AF10 in Caenorhabditis elegans. Genetics 197(1) 207-20
Zhuang JJ, Banse SA, Hunter CP. (2013) The nuclear argonaute NRDE-3 contributes to transitive RNAi in Caenorhabditis elegans. Genetics 194(1) 117-31
Zhuang JJ, Hunter CP. (2011) Tissue specificity of Caenorhabditis elegans enhanced RNA interference mutants. Genetics 188(1) 235-7
Conine CC, Batista PJ, Gu W, Claycomb JM, Chaves DA, Shirayama M, Mello CC. (2010) Argonautes ALG-3 and ALG-4 are required for spermatogenesis-specific 26G-RNAs and thermotolerant sperm in Caenorhabditis elegans. Proc Natl Acad Sci U S A 107(8) 3588-93
Almeida MV, Dietz S, Redl S, Karaulanov E, Hildebrandt A, Renz C, Ulrich HD, König J, Butter F, Ketting RF. (2018) GTSF-1 is required for formation of a functional RNA-dependent RNA Polymerase complex in <i>Caenorhabditis elegans</i>. EMBO J 37(12)
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